PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G03310.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 282aa    MW: 31484 Da    PI: 7.4695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G03310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.81e-2838128187
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k ltpsdv+k++rlv+pk++ae++    g    ++  l++ede g  W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ 
  OMERI11G03310.1  38 FEKPLTPSDVGKLNRLVIPKQHAERYfplgGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRG 128
                      99***************************8666668889************************************************7642 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-4132153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2835129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-2737130No hitNo description
PROSITE profilePS5086312.85838143IPR003340B3 DNA binding domain
SMARTSM010199.4E-2238143IPR003340B3 DNA binding domain
PfamPF023627.2E-2638128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA  60
ERYFPLGGDA ADKGLILSFE DEAGAPWRFR YSYWTSSQSY VLTKGWSRYV KEKRLDAGDV  120
VHFERVRGSF GVGDRLFIGC RRRGDAAAAQ TPAPPPAVRV APAAQNAGEQ QPWSPMCYST  180
SGGSYPTSPA NSYAYRRAAD HDHGDTHHAD ESPRDTDSPS FSAGSAPSRR LRLFGVNLDC  240
GPEPEADTTA AATMYGYMHQ QSSYAAMSAV PRAIHKKIDY EI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-51331433113B3 domain-containing transcription factor NGA1
5os9_B1e-51331433113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704870.0AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615108.11e-179B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-180Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A0E0F2Q50.0A0A0E0F2Q5_9ORYZ; Uncharacterized protein
STRINGOMERI11G03200.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]