PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G03230.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 295aa MW: 31291.9 Da PI: 6.5128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G03230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133	2.1e-41	18	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+ OMERI11G03230.1 18 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAvageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSC 111 69*************************99***********84455333335569***************************999 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++ OMERI11G03230.1 112 VISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149 998868889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-45	16	181	IPR003441	NAC domain
PROSITE profile	PS51005	46.153	17	182	IPR003441	NAC domain
Pfam	PF02365	9.5E-23	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MATTRSGGGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRPDVERVI PVVDVYGYHP 60 SQLAAVAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV 120 IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDADAAAAA MLHPMAPPRL RNELGVCRVY 180 ISTGTLRSFD RRPLDNQAAA PTQQQVMPSL TAAAAAVNTN LCGGSGGVVF AGAQGDSSRD 240 CSSSSGSREL AGGADGSEDD AIDWNSLISS ATADDLGFNT VVGFDPSIVG SWPQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	19	180	19	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	19	180	19	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	19	180	19	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	19	180	19	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-28	19	180	22	166	NAC domain-containing protein 19
3swm_B	2e-28	19	180	22	166	NAC domain-containing protein 19
3swm_C	2e-28	19	180	22	166	NAC domain-containing protein 19
3swm_D	2e-28	19	180	22	166	NAC domain-containing protein 19
3swp_A	2e-28	19	180	22	166	NAC domain-containing protein 19
3swp_B	2e-28	19	180	22	166	NAC domain-containing protein 19
3swp_C	2e-28	19	180	22	166	NAC domain-containing protein 19
3swp_D	2e-28	19	180	22	166	NAC domain-containing protein 19
4dul_A	1e-28	19	180	19	163	NAC domain-containing protein 19
4dul_B	1e-28	19	180	19	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109939	0.0	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615861.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0E0F2P6	0.0	A0A0E0F2P6_9ORYZ; Uncharacterized protein
STRING	OMERI11G03130.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-65	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]