PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G03130.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 484aa MW: 53047.4 Da PI: 6.7437

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G03130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.8	8.2e-12	180	208	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le OMERI11G03130.1 180 KTMRRLAQNREAARKSRLRKKAYIQQLES 208 6679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	8.887	178	222	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-7	178	216	No hit	No description
Pfam	PF00170	6.7E-9	180	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.38E-7	180	213	No hit	No description
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-29	259	333	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MGEASSSSGH PRQNPHVLGY GFHGAMPNSM PSAKLFEQQG GANYFGELEE ALMQQVATLR 60 RTQQTVTTTS TLHHGDTTPF STTATAEATA RPPPTLDIFP SWPMRSLHTP KEGSNVTADT 120 TDSESSSKNN SNQNASSDQH GLVGDMAGQF DQIPQQEQHK KMATNSPTHS SKTGKALDPK 180 TMRRLAQNRE AARKSRLRKK AYIQQLESSK LKLAQMEQDI HRARSQGLLL GAPGGNTSSG 240 AAMFDVDYAR WLEEDSRRMA ELHGGLHAHL PDSDLRAIVD DTLTHYDHLF NLKGMAAKAD 300 VFHLITGMWA TPAERCFLWM GGFRPSELLK TLIPQLDPLT EQQVVGICNL QQSSQQAEEA 360 LSQGLDQLHQ SLAETVAGGS PLDDANVGSF MGHMAIALGQ LSNLEGFVIQ ADNLRQQTIH 420 QMHRILTVRQ AARCFLAIGE YHNRLRALSS LWASRPREIL VADEGNCGEL SIAAHPSENQ 480 YSAF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MGEASSSSGH PRQNPHVLGY GFHGAMPNSM PSAKLFEQQG GANYFGELEE ALMQQVATLR  60
RTQQTVTTTS TLHHGDTTPF STTATAEATA RPPPTLDIFP SWPMRSLHTP KEGSNVTADT  120
TDSESSSKNN SNQNASSDQH GLVGDMAGQF DQIPQQEQHK KMATNSPTHS SKTGKALDPK  180
TMRRLAQNRE AARKSRLRKK AYIQQLESSK LKLAQMEQDI HRARSQGLLL GAPGGNTSSG  240
AAMFDVDYAR WLEEDSRRMA ELHGGLHAHL PDSDLRAIVD DTLTHYDHLF NLKGMAAKAD  300
VFHLITGMWA TPAERCFLWM GGFRPSELLK TLIPQLDPLT EQQVVGICNL QQSSQQAEEA  360
LSQGLDQLHQ SLAETVAGGS PLDDANVGSF MGHMAIALGQ LSNLEGFVIQ ADNLRQQTIH  420
QMHRILTVRQ AARCFLAIGE YHNRLRALSS LWASRPREIL VADEGNCGEL SIAAHPSENQ  480
YSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069411	0.0	AK069411.1 Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617800.1	0.0	transcription factor TGAL4 isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A0E0F2N6	0.0	A0A0E0F2N6_9ORYZ; Uncharacterized protein
STRING	OMERI11G03020.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-137	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]