PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G02750.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 436aa    MW: 48929.4 Da    PI: 4.3788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G02750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM951.2e-29331681128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkatg 87 
                      lppG++F Ptdeelv++yL+ k+eg++ +  ++i+e +i++++P++L +k+++ +e++wyfF+ r+ ++++ ++++nr+     +++g W+atg
  OMERI11G02750.1  33 LPPGYHFVPTDEELVDFYLRGKIEGRDPPR-RFINEDNIMRYDPQKLIEKYNGyGEDRWYFFMVREPSKTKkKDEPNRKvvvdgVEEGSWSATG 125
                      79*************************998.89**************8555543778*****9998776642779999656666679******* PP

              NAM  88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++s+    +++ +g k++L++   +a+++e+  W mhey l
  OMERI11G02750.1 126 SVVQIHSTketnRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 168
                      ******9866655666*********9..5666669********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3426185IPR003441NAC domain
PROSITE profilePS5100535.40433185IPR003441NAC domain
PfamPF023651.6E-1834168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MENGGSGGDG SAAAAAAEGS AIWKSELVPL LQLPPGYHFV PTDEELVDFY LRGKIEGRDP  60
PRRFINEDNI MRYDPQKLIE KYNGYGEDRW YFFMVREPSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVVQI HSTKETNRKA IIGSKRVLTY KSARSAENDM WSMHEYVLAG KSQMGQYVLC  180
AIQLKQTYER EEKAREEQKN DNKRNKKAAR RKNMQQQPTT CQAQDEQQET APTPGEETIN  240
VDPDQFRDIA HSMHMMFGGV DQDAPLMPSL CAPCNNDDGM LQLQPLQLQN PNPAMIYSNQ  300
LEPSYIGDQS MFIPCCCDGN CISCRQLQFY QQQQAEDGST VAFGEADLYQ QHDRALGDTG  360
VYPDNIWVDG NMADYAQRQI YNDQDNGGVL MQGPEGSATF PDNFLMLDEM AAGSDDVPGF  420
DYEVDQSMAV VPHVAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-163118715167NO APICAL MERISTEM PROTEIN
1ut4_B5e-163118715167NO APICAL MERISTEM PROTEIN
1ut7_A5e-163118715167NO APICAL MERISTEM PROTEIN
1ut7_B5e-163118715167NO APICAL MERISTEM PROTEIN
3swm_A5e-163118718170NAC domain-containing protein 19
3swm_B5e-163118718170NAC domain-containing protein 19
3swm_C5e-163118718170NAC domain-containing protein 19
3swm_D5e-163118718170NAC domain-containing protein 19
3swp_A5e-163118718170NAC domain-containing protein 19
3swp_B5e-163118718170NAC domain-containing protein 19
3swp_C5e-163118718170NAC domain-containing protein 19
3swp_D5e-163118718170NAC domain-containing protein 19
4dul_A5e-163118715167NAC domain-containing protein 19
4dul_B5e-163118715167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235260.0AC123526.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankBX0004990.0BX000499.1 Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697555.12e-95PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A0E0F2I90.0A0A0E0F2I9_9ORYZ; Uncharacterized protein
STRINGOMERI11G02660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-21NAC-like, activated by AP3/PI