PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI11G00630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 173aa MW: 18560.4 Da PI: 9.8438 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.4 | 2.4e-31 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ OMERI11G00630.1 61 PRLRWTPELHLSFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 114 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 57 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.92 | 57 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-15 | 58 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-23 | 60 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-9 | 62 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGSAGKEEEE EDGGGGAPAA AANNYGSSTT SSTTEEEGSG ESRRRTSSSS SVRPYVRSKN 60 PRLRWTPELH LSFVRAVDRL GGQDRATPKL VLQLMNVRGL SIGHVKSHLQ MYRSKKIDES 120 GQVIGGESWR SDDHLQMQGG GHGGQAYNLG HLSLPALNHR SITAGSGTIF QSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 62 | 114 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 62 | 114 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 62 | 114 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 62 | 114 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241171 | 0.0 | AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence. | |||
GenBank | GU046789 | 0.0 | GU046789.1 Oryza sativa Japonica Group cultivar Dongjin-byeo myb-like DNA-binding domain-containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617115.1 | 1e-120 | probable transcription factor RL9 isoform X1 | ||||
Refseq | XP_025877530.1 | 1e-120 | probable transcription factor RL9 isoform X2 | ||||
TrEMBL | A0A0E0F1F3 | 1e-122 | A0A0E0F1F3_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI11G00320.1 | 1e-119 | (Oryza rufipogon) | ||||
STRING | ONIVA11G00030.1 | 1e-119 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 9e-40 | G2-like family protein |