PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G14830.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 179aa    MW: 19374.3 Da    PI: 8.9817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G14830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.8e-073312255
                     HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +L++l+P++      K +Ka++L ++++Y+k+Lq
  OMERI10G14830.1  3 TLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 31
                     799999997.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.049130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-9139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-8135No hitNo description
SuperFamilySSF474592.62E-10153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKTLQKLVPN SSKTDKASML DEVIDYLKQL QAQVQVMSRM GSMMMPMGMA MPQLQMSVMA  60
QMAQMAQIGL SMMNMGQAGG FAPPMHMHTP PFLPVSWDAA AAAAAASSSS APAADRPPQP  120
TGAATSDAFS AFLASQAAQQ NAQQPNGMEA YNRMMAMYQK LNHQQQMQQQ QDQPSNSRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612716.11e-72transcription factor UNE10 isoform X1
RefseqXP_015612717.11e-72transcription factor UNE10 isoform X1
TrEMBLA0A0E0F0Y31e-121A0A0E0F0Y3_9ORYZ; Uncharacterized protein
STRINGOMERI10G14760.11e-121(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-14bHLH family protein