PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G14420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 654aa    MW: 67549.7 Da    PI: 6.5067
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G14420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.21.9e-942936532374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      ve+L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps++++++++ +l a+k+fsevsP+l+
  OMERI10G14420.1 293 VEQLAEAAKLAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGDAPAPSASTPYDVVVKLGAYKAFSEVSPVLQ 382
                      789*************************999555566******************99....999999*************************** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+hlt+ qa+l+++ g+ ++H++Dfdi++G QW++L+q+La+R++ ++ l++T+++sp+s++  el+ ++e+L+ fA+elgv f+f+v+   ++
  OMERI10G14420.1 383 FAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQRRS-AAALKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVF---NI 472
                      ******************************************965.589***************************************9...77 PP

             GRAS 187 edleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++l++ eL ++   g+a+aV+l +   +          ++++vL+lvk+l +kvvv v++ +d+++ +F+++++++++  ++l++s++a  +++
  OMERI10G14420.1 473 DTLDPAELlAIAAaGDAVAVHLPVGPAHAA--------ATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAV-GTD 557
                      77877766355557**********999997........5678*********************************************998.788 PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                       ++++k+Er l++++i+++v +++++   + +    Wr+++ +aGF pv+ +++a++qa++ll+kv+++g+rve++ gsl+l+W++ +LvsvSa
  OMERI10G14420.1 558 PDTASKIERYLIHPAIEQCVVARHRAAMDKAQPPPPWRAAFAAAGFAPVQATTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGELVSVSA 651
                      8********************************************************************************************* PP

             GRAS 373 Wr 374
                      Wr
  OMERI10G14420.1 652 WR 653
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.11266633IPR005202Transcription factor GRAS
PfamPF035146.7E-92293653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MPFGGSAREG HAGTLLQQHL IHGVGLAAGG KLVSSSASGA GAGGFWEPRS VLDHRHSPSP  60
SPPTSASTLS SPLADVAALA GANAKNVSVS PPPPGWGTGG GGGGGGGEEV VAAKEEWVHQ  120
LTPLDMGLGG SEGWDAAGNV LSDAAAATSG MAPDNTFLRW IIGGGEDASA AMAGVMDPPV  180
LELDHGGGGA APAAFGPFAP PPAMEDTKPV VPFAAGHPLP NFLLQHHHHH PQPHAAFFGA  240
HHPSFDAAPP PSKRHHPMAA APAPKLPPFP AGGFVPALKP KAEAANDEAA AAVEQLAEAA  300
KLAEAGDAFG AREILARLNY RLPAAPTAGT PLLRSAFYFK EALRLALSPT GDAPAPSAST  360
PYDVVVKLGA YKAFSEVSPV LQFAHLTCVQ AVLDELGGAG CIHVLDFDIG MGEQWASLMQ  420
ELAQRRSAAA LKVTALVSPA SHHPLELQLI HENLSGFAAE LGVFFHFTVF NIDTLDPAEL  480
LAIAAAGDAV AVHLPVGPAH AAATPAVLRL VKRLGAKVVV SVDRGCDRSD LPFAAHLFHS  540
FHSAVYLLES IDAVGTDPDT ASKIERYLIH PAIEQCVVAR HRAAMDKAQP PPPWRAAFAA  600
AGFAPVQATT FAESQAESLL SKVHVRGFRV EKRAGSLCLY WQRGELVSVS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2432465332375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLA0A0E0F0T40.0A0A0E0F0T4_9ORYZ; Uncharacterized protein
STRINGOMERI10G14410.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-79GRAS family protein