PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G13920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 393aa MW: 41663.3 Da PI: 4.6018 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8e-10 | 210 | 252 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL ++ Y+k+L OMERI10G13920.1 210 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIGYVKEL 252 79*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.665 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-14 | 207 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-11 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-14 | 210 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 210 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MELMDDDGSS SLLEELMAPL RRGTPPTTTP EDLWLQAYPM MMSPMCGDGV MLGDLLVGGA 60 GGDARNTLAS PPPPSFSLPV PLMTTTTTTP CPPLHEEVSF EFDSIDCLGE VCNPYKRSGG 120 AVRAAAAADA AQVMVAAMDP RSEAASSAVA VAAVEEEERC KARRGAGGGG DSGELAPMFV 180 FGGVGGGAAA SVRPRSCRPP QPGAPSKNLM AERRRRKRLN DRLSMLRSVV PRISKMDRTS 240 ILGDTIGYVK ELMDRIKNLQ VEAAAAAGDS SSSSTENLSM LNTLKLPSSS SSSSGDETPL 300 IRNSTRFEVE RRENGSTRIE MACAAIPELL PSTLAALAAL GVEIEQCVIS CFDDFAMQAS 360 CLQDDKKREI TRDTEEIKQT LFRSAGYGDG CLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 211 | 218 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063669 | 0.0 | AK063669.1 Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613752.2 | 0.0 | transcription factor TDR-like | ||||
Swissprot | Q9LSL1 | 2e-53 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0E0F0J4 | 0.0 | A0A0E0F0J4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G13910.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18317 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-50 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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