PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G13380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 592aa MW: 63263.4 Da PI: 7.0226 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.4e-09 | 351 | 388 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV +WF N R + OMERI10G13380.1 351 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 388 664459******************************88 PP | |||||||
2 | BELL | 93.7 | 1.7e-30 | 214 | 284 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag +a+ Yt+lA+++iSrhFr+L+d ++ q+ OMERI10G13380.1 214 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAAAYTRLASRTISRHFRSLRDGVVAQL 284 5799****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.0E-44 | 148 | 282 | IPR006563 | POX domain |
Pfam | PF07526 | 3.9E-42 | 154 | 280 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 329 | 392 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.74E-12 | 332 | 393 | No hit | No description |
SMART | SM00389 | 5.2E-9 | 332 | 396 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.89E-17 | 333 | 399 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 335 | 398 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-17 | 349 | 388 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MAHDPSLGYA DYFAAEVDGA GATELYGLQQ QQQGVGVAEM FGVRGLMPAA AAAAHAHEQS 60 KGVGALVGGG GGVGDDGGAT TLPTVHFGGL GELHHHHHHQ HRQSQAPLSL SLHRPEAAAT 120 SLLMQQQQQH LHHQPSPPAG AASTWQLQQG AWHLRGSRFL LPTQQLLQEF CSLPVKSTTS 180 PSSASKAPKP AQEDAAGGGS SSWTAPTQIQ SMDAAELQRL KGKLYTMLEE VDRRYRRYCE 240 QMRALAASFE AVAGERAAAA YTRLASRTIS RHFRSLRDGV VAQLQAVRKQ LGEKDTAVPG 300 MTKGETPRLR VLDQCLRQHK AYQAGMLESH PWRPQRGLPE RAVSILRAWL FEHFLHPYPS 360 DVDKHILARQ TGLSRSQVAN WFINARVRLW KPMVEEMYAE EMKDEEGSGQ SQGTSNPQNP 420 NPSSYTSEGR GGGGEDRGEQ KPSRAQLLHD AGSLASVVSI GHGGGAGRMV DHHHHHQSLN 480 FGMMDQLDFD AYEAAGGGQG FVGGGVSLTL GLQQQHADPH DGVNVAFAAA AAPPNSSGVA 540 AEYLFMGGGG GEHQQLPQAA QFGAVMEGDA ASHYRGLSAT AAGFHLLHDL AG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 338 | 395 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 338 | 395 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068029 | 0.0 | AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614125.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A0E0F0C2 | 0.0 | A0A0E0F0C2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G13390.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 2e-75 | TALE family protein |