PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G13380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 592aa    MW: 63263.4 Da    PI: 7.0226
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G13380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.4e-093513881954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV +WF N R +
  OMERI10G13380.1 351 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 388
                      664459******************************88 PP

2BELL93.71.7e-30214284272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  OMERI10G13380.1 214 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAAAYTRLASRTISRHFRSLRDGVVAQL 284
                      5799****************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-44148282IPR006563POX domain
PfamPF075263.9E-42154280IPR006563POX domain
PROSITE profilePS5007112.001329392IPR001356Homeobox domain
CDDcd000862.74E-12332393No hitNo description
SMARTSM003895.2E-9332396IPR001356Homeobox domain
SuperFamilySSF466893.89E-17333399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27335398IPR009057Homeodomain-like
PfamPF059202.2E-17349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAEVDGA GATELYGLQQ QQQGVGVAEM FGVRGLMPAA AAAAHAHEQS  60
KGVGALVGGG GGVGDDGGAT TLPTVHFGGL GELHHHHHHQ HRQSQAPLSL SLHRPEAAAT  120
SLLMQQQQQH LHHQPSPPAG AASTWQLQQG AWHLRGSRFL LPTQQLLQEF CSLPVKSTTS  180
PSSASKAPKP AQEDAAGGGS SSWTAPTQIQ SMDAAELQRL KGKLYTMLEE VDRRYRRYCE  240
QMRALAASFE AVAGERAAAA YTRLASRTIS RHFRSLRDGV VAQLQAVRKQ LGEKDTAVPG  300
MTKGETPRLR VLDQCLRQHK AYQAGMLESH PWRPQRGLPE RAVSILRAWL FEHFLHPYPS  360
DVDKHILARQ TGLSRSQVAN WFINARVRLW KPMVEEMYAE EMKDEEGSGQ SQGTSNPQNP  420
NPSSYTSEGR GGGGEDRGEQ KPSRAQLLHD AGSLASVVSI GHGGGAGRMV DHHHHHQSLN  480
FGMMDQLDFD AYEAAGGGQG FVGGGVSLTL GLQQQHADPH DGVNVAFAAA AAPPNSSGVA  540
AEYLFMGGGG GEHQQLPQAA QFGAVMEGDA ASHYRGLSAT AAGFHLLHDL AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16338395158Homeobox protein Meis1
4xrs_B2e-16338395158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680290.0AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0E0F0C20.0A0A0E0F0C2_9ORYZ; Uncharacterized protein
STRINGOMERI10G13390.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-75TALE family protein