PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI10G13220.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 329aa MW: 36087.3 Da PI: 5.0238

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI10G13220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.6	2.6e-49	8	130	1	122
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv++yL+kkv+++k++l +vi++vd+y++ePwdL++ ++ e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+ OMERI10G13220.1 8 VPPGFRFHPTDEELVSYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQEhcRIGYeEQSEWYFFSYKDRKYPTGTRTNRATMTGFWKATGRDKA 100 69**************************.9***********953533332566******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWv 122 v + + +l+g++ktLvfykgrap+g+ktdW+ OMERI10G13220.1 101 VRE-RCRLIGMRKTLVFYKGRAPNGHKTDWI 130 9.8899**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-51	4	142	IPR003441	NAC domain
PROSITE profile	PS51005	47.702	8	163	IPR003441	NAC domain
Pfam	PF02365	6.0E-23	9	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MVIMESCVPP GFRFHPTDEE LVSYYLRKKV ASQKIDLDVI RDVDLYRIEP WDLQEHCRIG 60 YEEQSEWYFF SYKDRKYPTG TRTNRATMTG FWKATGRDKA VRERCRLIGM RKTLVFYKGR 120 APNGHKTDWI EEGWVVCRAF KKRTMQPPRS SIGAWEASYS YHDPAVFVGG GEHFKQEAAA 180 ELDGVAAAAA AAAGANAFLR YSTGRLPELP QLESPPLPSQ GSQAASAVVD GEEDNADSSR 240 RPGGAAAAAV TTDWRAFDKF VASQLSPEEQ HTCRATDDDD MAALLLLDGG GQEDDAGRWL 300 GSAGLLSAVA ADATTDCGLG TSCVPGDIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-44	5	144	12	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092389	0.0	AC092389.4 Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence.
GenBank	AC113948	0.0	AC113948.5 Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence.
GenBank	AK106313	0.0	AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	JN634073	0.0	JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613865.1	0.0	NAC domain-containing protein 105
Swissprot	Q9SL41	1e-100	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A0E0F0A0	0.0	A0A0E0F0A0_9ORYZ; Uncharacterized protein
STRING	OMERI10G13190.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3625	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	7e-90	vascular related NAC-domain protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]