PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G11440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 30664.4 Da PI: 4.5916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.4e-13 | 3 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+++ +++G g +W + + +g+ R++ +c+srw++yl OMERI10G11440.1 3 KGKWSKEEDDLIKNHMEKYGIGrSWQALSDALGLQRCGRSCRSRWLNYL 51 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.8e-10 | 58 | 101 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++ E+ ++ + + G+ W++Ia+ ++ gRt+ +k++w++ OMERI10G11440.1 58 GDFSPAEERIICKMYSKKGSS-WSAIAAQLP-GRTDLAVKNYWNST 101 679****************99.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.125 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-10 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.21E-24 | 2 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-12 | 3 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 4 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.45E-9 | 5 | 51 | No hit | No description |
PROSITE profile | PS51294 | 15.535 | 56 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-11 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-9 | 58 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 59 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-7 | 60 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLQRCG RSCRSRWLNY LRPGLKHGDF 60 SPAEERIICK MYSKKGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRHRPAA SASATTSSDD 120 DDDVDDATPP GLALVVYSEG STAAAAAAGE LAPYSVSSPA AIADAAEEEG EEEPIAAVPI 180 STCILALPPP PPPPPPPPPP SNATGGEVSI PCFPFSPLPF IEPDLPELTW TTDLDDIAAG 240 FAAAADDACR YPKRPHPITP DSPRLPKLPA IAGFDDVQSF LSWFDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 1 | 105 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079888 | 0.0 | AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876753.1 | 1e-114 | transcription factor MYB30-like | ||||
TrEMBL | A0A0E0EZJ7 | 0.0 | A0A0E0EZJ7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G11360.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 7e-41 | myb domain protein 87 |