PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G10230.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 847aa    MW: 92589.7 Da    PI: 5.7143
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G10230.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-183694357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++++++ps ++r++L + +    +++ +q+kvWFqNrR ++k+
  OMERI10G10230.5 36 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 94
                     5678****************************************************996 PP
2START159.23.1e-501743812204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+      g  g+++l
  OMERI10G10230.5 174 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 266
                      7899******************************************************9999999999.***********999999999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  OMERI10G10230.5 267 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 360
                      ***************************************9999998888899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++a+l++ +
  OMERI10G10230.5 361 LYESSRVVAQKMTTAALRHIR 381
                      *****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4353195IPR001356Homeobox domain
SMARTSM003891.1E-153399IPR001356Homeobox domain
SuperFamilySSF466894.11E-163599IPR009057Homeodomain-like
CDDcd000863.66E-163696No hitNo description
PfamPF000465.0E-163794IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-183891IPR009057Homeodomain-like
CDDcd146862.08E-688127No hitNo description
Gene3DG3DSA:1.20.5.1704.5E-492142No hitNo description
PROSITE profilePS5084827.397164392IPR002913START domain
CDDcd088757.11E-73168384No hitNo description
SMARTSM002343.5E-37173383IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-21173359IPR023393START-like domain
SuperFamilySSF559611.51E-36174385No hitNo description
PfamPF018523.9E-48174381IPR002913START domain
PfamPF086704.1E-49704846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MAAAVAVAMR SGSGSGGGGG GGGGGGYDKA GMDSGKYVRY TPEQVEALER VYAECPKPSS  60
SRRQQLLRDC PILANIEPKQ IKVWFQNRRC RDKQRKEASR LQAVNRKLTA MNKLLMEENE  120
RLQKQVSQLV HENAYMKQQL QNPSLGNDTS CESNVTTPQN PLRDASNPSG LLTIAEETLT  180
EFLSKATGTA VDWVPMPGMK PGPDSFGIVA VSHGCRGVAA RACGLVNLEP TKIVEILKDR  240
PSWFRDCRSL EVFTMFPAGN GGTIELVYMQ MYAPTTLVPA RDFWTLRYTT TMEDGSLVVC  300
ERSLSGSGGG PSTASAQQFV RAEMLPSGYL VRPCEGGGSI VHIVDHLDLE AWSVPEVLRP  360
LYESSRVVAQ KMTTAALRHI RQIAQETSGE VVYALGRQPA VLRTFSQRLS RGFNDAISGF  420
NDDGWSVMGG DGIEDVIIAC NAKKVRNTST SANAFVTPGG VICAKASMLL QSVPPAVLVR  480
FLREHRSEWA DYNFDAYSAS SLKTSSCSLP GLRPMRFSGS QIIMPLAHTV ENEEILEVVR  540
LEGQALTHDD GLMSRDIHLL QLCTGIDEKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI  600
PLDMKTDGTP AGRTLDLASS LEVGSTAQPT GDASMDDCNL RSVLTIAFQF PYEMHLQDSV  660
ATMARQYVRS IVSSVQRVSM AISPSRSGLN AGQKIISGFP EAPTLARWIC QSYQFHLGVE  720
LLRQADDAGE ALLKMLWDYE DAILCCSFKE KPVFTFANEM GLNMLETSLV ALQDLSLDKI  780
FDEAGRKALY NEIPKLMEQG YVYLPGGVCL SGMGRHVSFE QAVAWKVLGE DNNVHCLAFC  840
FVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028300.0AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A0E0EYZ90.0A0A0E0EYZ9_9ORYZ; Uncharacterized protein
STRINGOMERI10G10020.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein