PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G10230.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 833aa MW: 90840.6 Da PI: 5.5719 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 36 | 94 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps ++r++L + + +++ +q+kvWFqNrR ++k+ OMERI10G10230.3 36 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 94 5678****************************************************996 PP | |||||||
2 | START | 129.8 | 3.3e-41 | 174 | 350 | 2 | 173 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ g g+++l OMERI10G10230.3 174 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 266 7899******************************************************9999999999.***********999999999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl+ OMERI10G10230.3 267 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLE 350 ***************************************9999998888899******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.435 | 31 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 33 | 99 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-16 | 35 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.56E-16 | 36 | 96 | No hit | No description |
Pfam | PF00046 | 4.8E-16 | 37 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.81E-6 | 88 | 127 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.4E-4 | 92 | 142 | No hit | No description |
PROSITE profile | PS50848 | 24.211 | 164 | 350 | IPR002913 | START domain |
CDD | cd08875 | 1.08E-65 | 168 | 350 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 5.4E-20 | 173 | 350 | IPR023393 | START-like domain |
SMART | SM00234 | 5.7E-23 | 173 | 387 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.22E-33 | 174 | 350 | No hit | No description |
Pfam | PF01852 | 8.3E-39 | 174 | 350 | IPR002913 | START domain |
Pfam | PF08670 | 4.0E-49 | 690 | 832 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 833 aa Download sequence Send to blast |
MAAAVAVAMR SGSGSGGGGG GGGGGGYDKA GMDSGKYVRY TPEQVEALER VYAECPKPSS 60 SRRQQLLRDC PILANIEPKQ IKVWFQNRRC RDKQRKEASR LQAVNRKLTA MNKLLMEENE 120 RLQKQVSQLV HENAYMKQQL QNPSLGNDTS CESNVTTPQN PLRDASNPSG LLTIAEETLT 180 EFLSKATGTA VDWVPMPGMK PGPDSFGIVA VSHGCRGVAA RACGLVNLEP TKIVEILKDR 240 PSWFRDCRSL EVFTMFPAGN GGTIELVYMQ MYAPTTLVPA RDFWTLRYTT TMEDGSLVVC 300 ERSLSGSGGG PSTASAQQFV RAEMLPSGYL VRPCEGGGSI VHIVDHLDLE VLGVFQKCFG 360 HSTSHLGQIA QETSGEVVYA LGRQPAVLRT FSQRLSRGFN DAISGFNDDG WSVMGGDGIE 420 DVIIACNAKK VRNTSTSANA FVTPGGVICA KASMLLQSVP PAVLVRFLRE HRSEWADYNF 480 DAYSASSLKT SSCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ ALTHDDGLMS 540 RDIHLLQLCT GIDEKSMGSC FQLVFAPIDE LFPDDAPLIS SGFRVIPLDM KTDGTPAGRT 600 LDLASSLEVG STAQPTGDAS MDDCNLRSVL TIAFQFPYEM HLQDSVATMA RQYVRSIVSS 660 VQRVSMAISP SRSGLNAGQK IISGFPEAPT LARWICQSYQ FHLGVELLRQ ADDAGEALLK 720 MLWDYEDAIL CCSFKEKPVF TFANEMGLNM LETSLVALQD LSLDKIFDEA GRKALYNEIP 780 KLMEQGYVYL PGGVCLSGMG RHVSFEQAVA WKVLGEDNNV HCLAFCFVNW SFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102830 | 0.0 | AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614901.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A0E0EZ01 | 0.0 | A0A0E0EZ01_9ORYZ; Uncharacterized protein | ||||
STRING | OBART10G13430.2 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |