PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G10230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 847aa MW: 92589.7 Da PI: 5.7143 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 1.9e-18 | 36 | 94 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps ++r++L + + +++ +q+kvWFqNrR ++k+ OMERI10G10230.1 36 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 94 5678****************************************************996 PP | |||||||
2 | START | 159.2 | 3.1e-50 | 174 | 381 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ g g+++l OMERI10G10230.1 174 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 266 7899******************************************************9999999999.***********999999999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+ OMERI10G10230.1 267 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 360 ***************************************9999998888899****************************************** PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s+++ ++k+++a+l++ + OMERI10G10230.1 361 LYESSRVVAQKMTTAALRHIR 381 *****************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.435 | 31 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 33 | 99 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.11E-16 | 35 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.66E-16 | 36 | 96 | No hit | No description |
Pfam | PF00046 | 5.0E-16 | 37 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-18 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.08E-6 | 88 | 127 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.5E-4 | 92 | 142 | No hit | No description |
PROSITE profile | PS50848 | 27.397 | 164 | 392 | IPR002913 | START domain |
CDD | cd08875 | 7.11E-73 | 168 | 384 | No hit | No description |
SMART | SM00234 | 3.5E-37 | 173 | 383 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.4E-21 | 173 | 359 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.51E-36 | 174 | 385 | No hit | No description |
Pfam | PF01852 | 3.9E-48 | 174 | 381 | IPR002913 | START domain |
Pfam | PF08670 | 4.1E-49 | 704 | 846 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MAAAVAVAMR SGSGSGGGGG GGGGGGYDKA GMDSGKYVRY TPEQVEALER VYAECPKPSS 60 SRRQQLLRDC PILANIEPKQ IKVWFQNRRC RDKQRKEASR LQAVNRKLTA MNKLLMEENE 120 RLQKQVSQLV HENAYMKQQL QNPSLGNDTS CESNVTTPQN PLRDASNPSG LLTIAEETLT 180 EFLSKATGTA VDWVPMPGMK PGPDSFGIVA VSHGCRGVAA RACGLVNLEP TKIVEILKDR 240 PSWFRDCRSL EVFTMFPAGN GGTIELVYMQ MYAPTTLVPA RDFWTLRYTT TMEDGSLVVC 300 ERSLSGSGGG PSTASAQQFV RAEMLPSGYL VRPCEGGGSI VHIVDHLDLE AWSVPEVLRP 360 LYESSRVVAQ KMTTAALRHI RQIAQETSGE VVYALGRQPA VLRTFSQRLS RGFNDAISGF 420 NDDGWSVMGG DGIEDVIIAC NAKKVRNTST SANAFVTPGG VICAKASMLL QSVPPAVLVR 480 FLREHRSEWA DYNFDAYSAS SLKTSSCSLP GLRPMRFSGS QIIMPLAHTV ENEEILEVVR 540 LEGQALTHDD GLMSRDIHLL QLCTGIDEKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI 600 PLDMKTDGTP AGRTLDLASS LEVGSTAQPT GDASMDDCNL RSVLTIAFQF PYEMHLQDSV 660 ATMARQYVRS IVSSVQRVSM AISPSRSGLN AGQKIISGFP EAPTLARWIC QSYQFHLGVE 720 LLRQADDAGE ALLKMLWDYE DAILCCSFKE KPVFTFANEM GLNMLETSLV ALQDLSLDKI 780 FDEAGRKALY NEIPKLMEQG YVYLPGGVCL SGMGRHVSFE QAVAWKVLGE DNNVHCLAFC 840 FVNWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102830 | 0.0 | AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614901.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A0E0EYZ9 | 0.0 | A0A0E0EYZ9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G10020.2 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |