PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G10210.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 702aa    MW: 76040.3 Da    PI: 6.942
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G10210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.6e-23127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++
  OMERI10G10210.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 216
                      89****************************996555555..8999*********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + +el+v+++r+
  OMERI10G10210.1 217 RHGELCVGIRRA 228
                      79999*****97 PP
2Auxin_resp118.17.1e-39289372183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ as++++Fev Y+Prast+eFvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  OMERI10G10210.1 289 AASLASNGQPFEVAYYPRASTPEFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 372
                      68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-36118230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-29120231IPR015300DNA-binding pseudobarrel domain
CDDcd100175.53E-21126227No hitNo description
PROSITE profilePS5086312.647127229IPR003340B3 DNA binding domain
PfamPF023621.7E-21127228IPR003340B3 DNA binding domain
SMARTSM010191.7E-21127229IPR003340B3 DNA binding domain
PfamPF065071.0E-33289372IPR010525Auxin response factor
PROSITE profilePS5174517.079604684IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MKEVGEEEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAELGP  60
RALPPLVLCR VEGVQFLADR DSDEVYAKIR LAPVAPGEAE FRETDELCPL GAAGDAPESS  120
PEKPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPKLDYRA DPPVQTVLAK DVHGVVWKFR  180
HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFLRTRHGE LCVGIRRAKR VACGGMECMS  240
GWNAPGYGGG GGGFSAFLKE EESKLMKGHG GGGYMKGKGK VRMADVVEAA SLASNGQPFE  300
VAYYPRASTP EFVVKAASVQ AAMRIQWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP  360
NRWPNSPWRL LQVTWDEPDL LQNVKCVSPW LVELVSSIPP IHLGPFSSPR KKLRVPPHPD  420
FPFEGHLLNP IFHGNPLGPS NSPLCCYPDT APAGIQGARH AQFGLPLTDH QLNKLHLGLL  480
HSGSFNRLDA ITPPSRISKG FVVSSAPAHD NVSCLLSIGT PQVVEKSDDR KTTPHIMLFG  540
KAIFTEQQIT SSGSRETLSP GVTGNSSSNG NAHKTGNASD GSGSSICIGF SSQGHEASDL  600
GLEAGHCKVF MESEDVGRTI DLSVFGSYEE LYGRLADMFG IEKEEIINHL HFRDAAGVVK  660
HPGEVPFSDF MKAARRLTII AGDRERIERP LIECLVEQAI SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-77139737392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186170.0AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614842.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A0E0EYZ70.0A0A0E0EYZ7_9ORYZ; Auxin response factor
STRINGOMERI10G10000.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]