PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G10050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 35662.1 Da PI: 5.6091 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.8 | 5.3e-50 | 11 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF P+deelv++yL++kv+++++ ++ +vd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v++ OMERI10G10050.1 11 LPPGFRFCPSDEELVCFYLRNKVANHRVAS-GTLVDVDLHAREPWELPEVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRIVHE 103 79*************************888.88***************87788899**********************************9999 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++vg++ktLvfy grap+g+kt+Wvmhe+rle OMERI10G10050.1 104 GtTRAVVGMRKTLVFYLGRAPNGQKTTWVMHEFRLE 139 766778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-59 | 8 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 11 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MAGLREMEST LPPGFRFCPS DEELVCFYLR NKVANHRVAS GTLVDVDLHA REPWELPEVA 60 KLTAEEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRI VHEGTTRAVV GMRKTLVFYL 120 GRAPNGQKTT WVMHEFRLET PNSQPKEDWV LCRVFDKKKP STIEAEGGGS SGSDLFIPGA 180 TDGSIDPSSP TTMAPLLSSS PDPTVVDRFD HRSAAVPPLM VLMQGGGDQM ISGSGVHCSN 240 NDNSGGSNAL LNLTMLQYSF LEHRPTGDDM AVGAHFGTCQ GGNNDATMAL GMGFEEHGMG 300 EIIEMEPAWR QGGSNCVYRD ELYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-49 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-49 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-49 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-49 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 10 | 158 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 9e-49 | 10 | 158 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 9e-49 | 10 | 158 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834701 | 0.0 | CT834701.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115P09, full insert sequence. | |||
GenBank | GQ229485 | 0.0 | GQ229485.1 Oryza sativa Japonica Group NAM-domain transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613250.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q84TE6 | 2e-59 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0EYX0 | 0.0 | A0A0E0EYX0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G09810.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 6e-77 | NAC domain containing protein 74 |