PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G10050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 324aa    MW: 35662.1 Da    PI: 5.6091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G10050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.3e-50111391129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deelv++yL++kv+++++    ++ +vd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v++
  OMERI10G10050.1  11 LPPGFRFCPSDEELVCFYLRNKVANHRVAS-GTLVDVDLHAREPWELPEVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRIVHE 103
                      79*************************888.88***************87788899**********************************9999 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++++vg++ktLvfy grap+g+kt+Wvmhe+rle
  OMERI10G10050.1 104 GtTRAVVGMRKTLVFYLGRAPNGQKTTWVMHEFRLE 139
                      766778***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-598157IPR003441NAC domain
PROSITE profilePS5100557.4611157IPR003441NAC domain
PfamPF023656.0E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAGLREMEST LPPGFRFCPS DEELVCFYLR NKVANHRVAS GTLVDVDLHA REPWELPEVA  60
KLTAEEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRI VHEGTTRAVV GMRKTLVFYL  120
GRAPNGQKTT WVMHEFRLET PNSQPKEDWV LCRVFDKKKP STIEAEGGGS SGSDLFIPGA  180
TDGSIDPSSP TTMAPLLSSS PDPTVVDRFD HRSAAVPPLM VLMQGGGDQM ISGSGVHCSN  240
NDNSGGSNAL LNLTMLQYSF LEHRPTGDDM AVGAHFGTCQ GGNNDATMAL GMGFEEHGMG  300
EIIEMEPAWR QGGSNCVYRD ELYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-491015816166NO APICAL MERISTEM PROTEIN
1ut4_B9e-491015816166NO APICAL MERISTEM PROTEIN
1ut7_A9e-491015816166NO APICAL MERISTEM PROTEIN
1ut7_B9e-491015816166NO APICAL MERISTEM PROTEIN
3swm_A1e-481015819169NAC domain-containing protein 19
3swm_B1e-481015819169NAC domain-containing protein 19
3swm_C1e-481015819169NAC domain-containing protein 19
3swm_D1e-481015819169NAC domain-containing protein 19
3swp_A1e-481015819169NAC domain-containing protein 19
3swp_B1e-481015819169NAC domain-containing protein 19
3swp_C1e-481015819169NAC domain-containing protein 19
3swp_D1e-481015819169NAC domain-containing protein 19
4dul_A9e-491015816166NAC domain-containing protein 19
4dul_B9e-491015816166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347010.0CT834701.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115P09, full insert sequence.
GenBankGQ2294850.0GQ229485.1 Oryza sativa Japonica Group NAM-domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613250.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE62e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0EYX00.0A0A0E0EYX0_9ORYZ; Uncharacterized protein
STRINGOMERI10G09810.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-77NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]