PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G07220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 26505 Da PI: 9.5233 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.1 | 4.8e-25 | 19 | 154 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp Gf F+Ptd+el+ L+ k g++ +++++ +++++i++++P +L k +k eek +yfFskr+ ++++kr+ r+++ g W+++g OMERI10G07220.1 19 LPIGFYFEPTDQELL-AILELKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYAKDEEKgYIYFFSKREFPTSSKKRPLRVAEGGAWNSSGAVY 111 699************.6688888888844445556**************8345555555455*****************************965 PP NAM 91 evlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127 + +++ +g +vg kktLvf++ ++ ++kt+W ++e++ OMERI10G07220.1 112 KAVKSnksgGGYDVGHKKTLVFHQRlpGDKVAVKTNWAIQEFT 154 5555436666667**********7533455668********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-31 | 12 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.111 | 19 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-13 | 20 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAPEDGEDG SFGKNKHGLP IGFYFEPTDQ ELLAILELKR LGRPLSRAHD AFFHDIRILD 60 FHPAELYEKY AKDEEKGYIY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKAVKSNKSG 120 GGYDVGHKKT LVFHQRLPGD KVAVKTNWAI QEFTGIIGPQ NEVPDLAVYR LYKMRKEGRE 180 TPADLAADAA TAAAAMNNGG QQASAAAMAL PPPATGLPGG RMMSMADKAN MASTSKAYAT 240 SQSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242158 | 0.0 | AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614025.1 | 1e-143 | spidroin-2 | ||||
TrEMBL | A0A0E0EXU3 | 1e-180 | A0A0E0EXU3_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA10G09250.1 | 1e-144 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 5e-13 | NAC domain containing protein 25 |