PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G07210.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 296aa    MW: 33269.9 Da    PI: 10.0501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G07210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.54.8e-18111363127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +G+rF P+d el+   L +k++g++  ++e ++++++i++++P +L +++++ ee+e   yfFs+ + +    k  +r+++ g+Wk      e 
  OMERI10G07210.1  11 VGIRFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTIQFRC--RKIVERVAQGGRWKVNNC--ET 99 
                      7************.78*********54555569*************743333133333347888777665..56899*9*******7655..44 PP

              NAM  93 lskkgelvglkktLvfyk..grapkgektdWvmheyr 127
                      ++ +g +vg k t+ fy+  g +++   t+W m+e++
  OMERI10G07210.1 100 MEVGGVAVGRKFTMNFYEhiGGDNDLIWTNWGMQEFA 136
                      44489************5336788889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-246156IPR003441NAC domain
PROSITE profilePS5100519.8499157IPR003441NAC domain
PfamPF023659.8E-1011136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAAPEGQNKF VGIRFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA  60
EDEEEEGYIY FFSTIQFRCR KIVERVAQGG RWKVNNCETM EVGGVAVGRK FTMNFYEHIG  120
GDNDLIWTNW GMQEFARIIG PNKEFTDLAV YCLYKKKITR GNGEEKPEDI AAASDGDTES  180
SMNKHRRVEA SAAAMALPPP SPGLPGTMMF MANQANVAST SHSRRNGTAS SPTALRRRRV  240
LAAAGPGRHR RRRAQWSLSA SGPARRRRLS CRRELPPAVG RRVLLGNDKR INDKEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246254GRHRRRRAQ
2250267RRRAQWSLSASGPARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109420.0AK110942.1 Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876515.11e-130uncharacterized protein LOC4348617
TrEMBLA0A0E0EXU20.0A0A0E0EXU2_9ORYZ; Uncharacterized protein
STRINGOMERI10G06910.11e-138(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1920699