PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI10G06470.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 970aa MW: 103713 Da PI: 4.9055

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI10G06470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.5	1.2e-23	461	629	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk.................................kvkaeekew.y 59 +p+Gf F P+d el ++k v+g+ + ++v+++++i++++P L+ +++ e+ + y OMERI10G06470.1 461 MPVGFYFVPKDLELFAILMCKLVRGEVPGAlNNVFEQIRILEFHPALLRGrpaspppiaaattedlkpcsssssspamacaetYIENMENGCmY 554 699************999999999965514569*********845889*************99999998876644445554459 PP NAM 60 fFskrd..kkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 fFs+r+ +k+++++r+ r+++ g+Wka+g +k+v sk +g +vg k t+vfy + +++++kt+W mhey+ OMERI10G06470.1 555 FFSRRQfaTKATNKRRPMRVANGGTWKASGGSKTVRSKkvGGIDVGQKLTMVFYerrFEGDQNPVKTNWAMHEYT 629 999997224455899999**************99888899******44313466779*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81383	1.83E-6	365	418	IPR001810	F-box domain
SuperFamily	SSF101941	2.09E-6	454	511	IPR003441	NAC domain
PROSITE profile	PS51005	28.941	461	650	IPR003441	NAC domain
Pfam	PF02365	1.1E-13	462	629	IPR003441	NAC domain
SuperFamily	SSF101941	4.58E-22	548	653	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MALKNSGLID FCLNAAAAAS STDEPSTSSA LPPPTPPRPL PDMAGPSSAT PLLPLQLPDM 60 ARHSSATPLL PLSLPGLAGG MMSMADQANM TSTSQASTLS SELLQDWYDE FEITYGAVMP 120 PSPSTISEAA PQSSPTGWWP SSNGGPMQHD DYLGMADPAS YTCPPRAAIP PEPMAPLKSS 180 PAPPPAVEHH RLSPPHDAAG NNYNYGGGTQ AQHEHQHRLH PQEPQALVVD GEDGYDAMPG 240 DDDEQLGGAE FDTERIAEMV NHIMDGEFED NTVLKYNEVF PDDDEVVAAP MMIDGGGDGD 300 GADGGPSGPR VWPLKRRNER KKEKGKGKLY PHALVPFAGG ERRLFTRRRA STTAFAMEPG 360 AASRAYLPDD LVADILTRLP ARSVCRFRAP SWRALATERQ SVLAHRPRRP RPRRRGPHES 420 PPPQERPSAD GDGSDGSNNN NGKWKGKKKV VSEYGKNRHG MPVGFYFVPK DLELFAILMC 480 KLVRGEVPGA LNNVFEQIRI LEFHPALLRG RPASPPPIAA ATTEDLKPCS SSSSSPAMAC 540 AETYIENMEN GCMYFFSRRQ FATKATNKRR PMRVANGGTW KASGGSKTVR SKKVGGIDVG 600 QKLTMVFYER RFEGDQNPVK TNWAMHEYTK IIPGSKNQLE DLAVYRLYKI RRKEDTEPVN 660 AAAAASSTDK PSTPAALPPP TPPPRPLPDM AGSSSATSLL PLQLPGLAGS SSTRPLALPL 720 QLPGLPGSSS AMSLPSLAGE MTSMADQANM ASTSQASTPS SELPQDWYDE YEVAYGAAAP 780 PSPSTISWAA LPSSPTAWWP SSNGGPVQHD GYLGMADPAS YTLEHLLPTA AIPPEPMAPP 840 KNSPAAPPPA VDHHQQLLPP QDAGGNYDHP ELADYGGGAQ AQHEHHHHPQ ELTDGADGDE 900 QLELGAAEFD SERVAEMVSR IMDGEFVFKF EDDTIVSFNE VAAAPMLIEG GGDGDGDGAD 960 GGVGDDPFDN

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MALKNSGLID FCLNAAAAAS STDEPSTSSA LPPPTPPRPL PDMAGPSSAT PLLPLQLPDM  60
ARHSSATPLL PLSLPGLAGG MMSMADQANM TSTSQASTLS SELLQDWYDE FEITYGAVMP  120
PSPSTISEAA PQSSPTGWWP SSNGGPMQHD DYLGMADPAS YTCPPRAAIP PEPMAPLKSS  180
PAPPPAVEHH RLSPPHDAAG NNYNYGGGTQ AQHEHQHRLH PQEPQALVVD GEDGYDAMPG  240
DDDEQLGGAE FDTERIAEMV NHIMDGEFED NTVLKYNEVF PDDDEVVAAP MMIDGGGDGD  300
GADGGPSGPR VWPLKRRNER KKEKGKGKLY PHALVPFAGG ERRLFTRRRA STTAFAMEPG  360
AASRAYLPDD LVADILTRLP ARSVCRFRAP SWRALATERQ SVLAHRPRRP RPRRRGPHES  420
PPPQERPSAD GDGSDGSNNN NGKWKGKKKV VSEYGKNRHG MPVGFYFVPK DLELFAILMC  480
KLVRGEVPGA LNNVFEQIRI LEFHPALLRG RPASPPPIAA ATTEDLKPCS SSSSSPAMAC  540
AETYIENMEN GCMYFFSRRQ FATKATNKRR PMRVANGGTW KASGGSKTVR SKKVGGIDVG  600
QKLTMVFYER RFEGDQNPVK TNWAMHEYTK IIPGSKNQLE DLAVYRLYKI RRKEDTEPVN  660
AAAAASSTDK PSTPAALPPP TPPPRPLPDM AGSSSATSLL PLQLPGLAGS SSTRPLALPL  720
QLPGLPGSSS AMSLPSLAGE MTSMADQANM ASTSQASTPS SELPQDWYDE YEVAYGAAAP  780
PSPSTISWAA LPSSPTAWWP SSNGGPVQHD GYLGMADPAS YTLEHLLPTA AIPPEPMAPP  840
KNSPAAPPPA VDHHQQLLPP QDAGGNYDHP ELADYGGGAQ AQHEHHHHPQ ELTDGADGDE  900
QLELGAAEFD SERVAEMVSR IMDGEFVFKF EDDTIVSFNE VAAAPMLIEG GGDGDGDGAD  960
GGVGDDPFDN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651177.1	0.0	NAC transcription factor NAM-B2 isoform X1
TrEMBL	A0A0E0EXI6	0.0	A0A0E0EXI6_9ORYZ; Uncharacterized protein
STRING	OMERI10G06210.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3563	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	1e-11	NAC domain containing protein 3