PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G06140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 155aa MW: 17240.8 Da PI: 10.6212 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 22.6 | 2.9e-07 | 42 | 89 | 1 | 47 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdL 47 +p+Gf F P+d el +++k v+gk + + +++++i++++P L OMERI10G06140.1 42 MPVGFYFVPKDLELFAIFMCKLVRGKVPGALNNiFEHIRILEFHPALL 89 699***********************976655538899*******987 PP | |||||||
2 | NAM | 36.8 | 1.2e-11 | 92 | 144 | 80 | 127 |
NAM 80 sgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 g+Wka+g +k+v sk +g vg k t+vfy + +++++kt+W mhe++ OMERI10G06140.1 92 GGTWKASGGSKTVRSKkvGGIIVGQKLTMVFYerrFEGDQNPVKTNWGMHEFT 144 79************99888889**********44313466779********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 10.846 | 1 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-24 | 36 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-9 | 43 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MAEQPPADRD SGGSGGSNNN NNGKWKGKEK VVPEFGKNRH GMPVGFYFVP KDLELFAIFM 60 CKLVRGKVPG ALNNIFEHIR ILEFHPALLH DGGTWKASGG SKTVRSKKVG GIIVGQKLTM 120 VFYERRFEGD QNPVKTNWGM HEFTKIIPGT KNQSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122144 | 1e-102 | AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence. | |||
GenBank | AP014966 | 1e-102 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 1e-72 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | A0A0E0EXE3 | 1e-110 | A0A0E0EXE3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G05870.1 | 1e-111 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 4e-08 | NAC 014 |