PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G06110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 525aa MW: 56292.9 Da PI: 4.6252 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.2 | 4.4e-25 | 36 | 172 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrd..kkyatgkrknratksgyWkatgkd 89 +p+G+ F P+d el +k v+g+ l++v+++++i++++P L+ + + +ee+ +yfFs+r+ +k+++++r++r++k g+Wka+g + OMERI10G06110.1 36 MPVGCYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQftTKAENKRRPTRVAKGGTWKASGGS 129 699************7766666666653334566999***********8445555555356999999732455589999*************** PP NAM 90 kevlsk..kgelvglkktLvfykgr...apkgektdWvmheyr 127 k+v sk +g +vg k t+vfy+ r + ++ kt+W mhe++ OMERI10G06110.1 130 KTVRSKkvGGIDVGQKLTMVFYEHRfegDLNPIKTNWGMHEFT 172 ****99888899**********65411145678********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-33 | 30 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.579 | 36 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-13 | 37 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MAEQPPEGGG GGGNNNGKWK GKEKVVPGYG KNRHGMPVGC YFVPKDLELF AILRCKLVRG 60 QLPGALNNVF EHIRILEFHP ALLHETYIGN EEDGYIYFFS RRQFTTKAEN KRRPTRVAKG 120 GTWKASGGSK TVRSKKVGGI DVGQKLTMVF YEHRFEGDLN PIKTNWGMHE FTKIINGTKN 180 QLEDLAVYRL YKIKRKEDEE PSNSAAAALS TDEPSTSSAL PPPTPPRPLP DMAGPSSAMP 240 LLPLQLPGLA GSSSAMSLPA LQLPGMAGSS SAMPLPLSLP GLAGGMMSMA DQANMASTSQ 300 ASTPSSELLQ DWYDEFEITY GAVAPPSPST ISWVAPQSSP TGWWPSTNGG PVQHDGYLGM 360 AADPTSYVLE HLLPTAAIPP EPMMPPTSSP APPPAVDHHR LSPPNDAAGS NYNHPELADY 420 NGGVQAQHEH QYHPQEPQAS LVDGEDGYGA MAGGDDAQLG GAELDTERIA EMVNHIMDGE 480 FEFKFEDNTV LKYSEVFPDN DEVVAAPMMI DGGGDGDDAD GGDDN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092388 | 0.0 | AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence. | |||
GenBank | AC122144 | 0.0 | AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 0.0 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | A0A0E0EXD9 | 0.0 | A0A0E0EXD9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G05850.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 5e-14 | NAC family protein |