PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G06110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 525aa    MW: 56292.9 Da    PI: 4.6252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G06110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.24.4e-25361721127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrd..kkyatgkrknratksgyWkatgkd 89 
                      +p+G+ F P+d el     +k v+g+    l++v+++++i++++P  L+ + + +ee+  +yfFs+r+  +k+++++r++r++k g+Wka+g +
  OMERI10G06110.1  36 MPVGCYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQftTKAENKRRPTRVAKGGTWKASGGS 129
                      699************7766666666653334566999***********8445555555356999999732455589999*************** PP

              NAM  90 kevlsk..kgelvglkktLvfykgr...apkgektdWvmheyr 127
                      k+v sk  +g +vg k t+vfy+ r   + ++ kt+W mhe++
  OMERI10G06110.1 130 KTVRSKkvGGIDVGQKLTMVFYEHRfegDLNPIKTNWGMHEFT 172
                      ****99888899**********65411145678********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3330196IPR003441NAC domain
PROSITE profilePS5100530.57936193IPR003441NAC domain
PfamPF023652.7E-1337172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAEQPPEGGG GGGNNNGKWK GKEKVVPGYG KNRHGMPVGC YFVPKDLELF AILRCKLVRG  60
QLPGALNNVF EHIRILEFHP ALLHETYIGN EEDGYIYFFS RRQFTTKAEN KRRPTRVAKG  120
GTWKASGGSK TVRSKKVGGI DVGQKLTMVF YEHRFEGDLN PIKTNWGMHE FTKIINGTKN  180
QLEDLAVYRL YKIKRKEDEE PSNSAAAALS TDEPSTSSAL PPPTPPRPLP DMAGPSSAMP  240
LLPLQLPGLA GSSSAMSLPA LQLPGMAGSS SAMPLPLSLP GLAGGMMSMA DQANMASTSQ  300
ASTPSSELLQ DWYDEFEITY GAVAPPSPST ISWVAPQSSP TGWWPSTNGG PVQHDGYLGM  360
AADPTSYVLE HLLPTAAIPP EPMMPPTSSP APPPAVDHHR LSPPNDAAGS NYNHPELADY  420
NGGVQAQHEH QYHPQEPQAS LVDGEDGYGA MAGGDDAQLG GAELDTERIA EMVNHIMDGE  480
FEFKFEDNTV LKYSEVFPDN DEVVAAPMMI DGGGDGDDAD GGDDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923880.0AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221440.0AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0EXD90.0A0A0E0EXD9_9ORYZ; Uncharacterized protein
STRINGOMERI10G05850.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.15e-14NAC family protein