PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G05560.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 306aa    MW: 32252.3 Da    PI: 7.8386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G05560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-19112161255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+++tae+Aa a++ a+ +l+g
  OMERI10G05560.1 112 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEDAALAYDGAAFRLRG 161
                      59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.22E-29111171No hitNo description
SuperFamilySSF541714.64E-22112170IPR016177DNA-binding domain
SMARTSM003807.3E-36112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-32112170IPR001471AP2/ERF domain
PROSITE profilePS5103223.143112169IPR001471AP2/ERF domain
PfamPF008474.1E-13113161IPR001471AP2/ERF domain
PRINTSPR003671.1E-10113124IPR001471AP2/ERF domain
PRINTSPR003671.1E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDRQWRCLAA AASTSGSSSK LPPLPMALGG GVEYGQLVHG AAAPVPFVVD AEQQGLSPAA  60
AMVLGAGWYN YNLVTPAQAA QLHHRLRRAV GAAPCAMKRC GGMAAAAAPA KLYRGVRQRH  120
WGKWVAEIRL PRNRTRLWLG TYDTAEDAAL AYDGAAFRLR GDAARLNFPE LRRGGRHHAP  180
PLSASVDAKI LQATTSTTAE SDTTAAAPST NTPPPPSPRV VKTEPGCCSV SEASTTTTAD  240
AADVSSTGCS LSPTSSNPGA TATPPPPPLP ETMQQLDFTE APWDEADGFA LRRYPSWEID  300
WDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20108169163ATERF1
3gcc_A2e-20108169163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613762.11e-157ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0E0EX520.0A0A0E0EX52_9ORYZ; Uncharacterized protein
STRINGOMERI10G05330.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.16e-33ERF family protein