PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G00690.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 242aa MW: 27040.4 Da PI: 10.8667 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 290.4 | 7.3e-89 | 1 | 237 | 65 | 296 |
GAGA_bind 65 kalae.rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkk 151 ++++ +++++++r+ k+l+ l v ++ + +pvg+++++ t+++ +lq++ e pql++++ + ++ee+++ + +ee++ + + +k OMERI10G00690.3 1 MWMHMqQQHHHHPREPKVLHTLSVGHGGHiahHDHPVGYGMMPATHTLRMLQHQPEpqPQLQHPPSPpHPKEECISPPLMEENV--PVKPPPPK 92 5898725667789***********99988887889**************99997666799*99999978999999888877755..56788999 PP GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244 krq++++pk+++ kk+kk +++++++ +++sa+ +r++ ++k+i++v+ng++lD s++P+ +CsCtGa++qCY+WG+GGWqSaCCttt+S+yPL OMERI10G00690.3 93 KRQQGRQPKVPRPKKPKK-PAAPREDGAPPSAPaPRRRGPRKNIGMVINGIDLDLSRIPTRICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPL 185 99****************.9999********999************************************************************ PP GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296 +s krrgaRiagrKmS+gafkk+LekLa+e y+l+np+DLk++WAkHGtnk OMERI10G00690.3 186 LMSMKRRGARIAGRKMSHGAFKKVLEKLASEVYNLNNPIDLKTFWAKHGTNK 237 ***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.2E-109 | 1 | 237 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.0E-92 | 5 | 237 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MWMHMQQQHH HHPREPKVLH TLSVGHGGHI AHHDHPVGYG MMPATHTLRM LQHQPEPQPQ 60 LQHPPSPPHP KEECISPPLM EENVPVKPPP PKKRQQGRQP KVPRPKKPKK PAAPREDGAP 120 PSAPAPRRRG PRKNIGMVIN GIDLDLSRIP TRICSCTGAP QQCYRWGAGG WQSACCTTTV 180 STYPLLMSMK RRGARIAGRK MSHGAFKKVL EKLASEVYNL NNPIDLKTFW AKHGTNKESG 240 AI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00253 | DAP | Transfer from AT2G01930 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC078891 | 0.0 | AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence. | |||
GenBank | AC145127 | 0.0 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY570520 | 0.0 | AY570520.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612725.1 | 1e-122 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612727.1 | 1e-122 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612730.1 | 1e-122 | barley B recombinant-like protein B isoform X1 | ||||
Refseq | XP_015612731.1 | 1e-122 | barley B recombinant-like protein B isoform X1 | ||||
Swissprot | P0DH88 | 1e-123 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 1e-123 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0E0EVC4 | 1e-177 | A0A0E0EVC4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G00650.1 | 1e-174 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-53 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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