PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G00680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 402aa    MW: 43794.7 Da    PI: 10.437
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G00680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind327.24.6e-100533661278
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki...........rernlalsekkaavaerd......................... 57 
                      mddd++++ + +g++e+      +lglqlms   +rd+k+           +++++  +++++++++rd                         
  OMERI10G00680.1  53 MDDDANMSiKWRGFFESP----AKLGLQLMSG--DRDTKQllsgspflhhqHQQHV-PHHHHQPHHPRDcgangnanggamppppateappsmp 139
                      9*******77677***99....5799****95..8****99*******99656666.9************************************ PP

        GAGA_bind  58 maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeak 145
                      m+f+++d++++   +++++++r++++l++l+v +++a   +++pvg+++++gt++++++qq++epq ++++ + +++ee+++++ iee++++++
  OMERI10G00680.1 140 MNFVRSDMWMHPqqQQQHHHPRQHNVLHNLTVGHGSAhiaHHDPVGYGMIPGTHTLQMMQQQTEPQPQPPPPPqQPKEECISSPLIEENVPVID 233
                      **********9754778999**************9988999***************************99999899****************** PP

        GAGA_bind 146 ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238
                      e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+P+CsCtGa++qCY+WG+GGWqSaCCttt
  OMERI10G00680.1 234 EPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTT 326
                      ************************.88999*******999****************************************************** PP

        GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
                      iS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+
  OMERI10G00680.1 327 ISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYQ 366
                      ***************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.1E-9353366IPR010409GAGA-binding transcriptional activator
SMARTSM012263.3E-15253367IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGAFRTRRHD ISSPSVSGAD LHPPAEQRPA PPPSPSVPPV SRPGFGGCGG GEMDDDANMS  60
IKWRGFFESP AKLGLQLMSG DRDTKQLLSG SPFLHHQHQQ HVPHHHHQPH HPRDCGANGN  120
ANGGAMPPPP ATEAPPSMPM NFVRSDMWMH PQQQQQHHHP RQHNVLHNLT VGHGSAHIAH  180
HDPVGYGMIP GTHTLQMMQQ QTEPQPQPPP PPQQPKEECI SSPLIEENVP VIDEPPPPKK  240
RQQGRQPKVP RAKKPKKSAA PREDGAPPNA PAPRRRGPRK NIGMVINGID LDLSRIPTPI  300
CSCTGAPQQC YRWGAGGWQS ACCTTTISTY PLPMSTKRRG ARIAGRKMSH GAFKKVLEKL  360
AGEGYQRPFV LARAHHSSAI GGVQVVGNLR AAQPPSQRTH CQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612725.11e-161barley B recombinant-like protein A isoform X1
RefseqXP_015612727.11e-161barley B recombinant-like protein A isoform X1
RefseqXP_015612730.11e-161barley B recombinant-like protein B isoform X1
RefseqXP_015612731.11e-161barley B recombinant-like protein B isoform X1
SwissprotP0DH881e-162BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-162BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0E0EVB90.0A0A0E0EVB9_9ORYZ; Uncharacterized protein
STRINGOMERI10G00640.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.27e-45basic pentacysteine1
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]