PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G14160.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 366aa MW: 40219.1 Da PI: 4.7897

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G14160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.1	2e-54	116	245	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v OMERI09G14160.1 116 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 208 79**************************.99**********84335556888******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+++g+kktLv+y+grap+g++tdWvmheyrl OMERI09G14160.1 209 VHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 245 99978899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-64	107	268	IPR003441	NAC domain
PROSITE profile	PS51005	60.881	116	268	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	117	245	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTDVP TTVPPTPALA ALKNLLIRVV 60 AAAAGKGLSS SAEEARCLWA KPPVPEEEEE ETGQQPERPP SYRRPPTSTL MAPVGLPPGF 120 RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR 180 DRKYPNGFRT NRATRAGYWK STGKDRRVVH QHGGRAIGMK KTLVYYRGRA PQGVRTDWVM 240 HEYRLDDKDC EDTMPIQDTY ALCRVFKKNA ICTEVEELQG QCSMALLEGA CQQLLASSGG 300 GGQEQYETPS PPDVPVGSTS GGADADAEDD PDKDDSWMQF ISDDAWCSST ADGGAEESTS 360 CVALAG

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTDVP TTVPPTPALA ALKNLLIRVV  60
AAAAGKGLSS SAEEARCLWA KPPVPEEEEE ETGQQPERPP SYRRPPTSTL MAPVGLPPGF  120
RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR  180
DRKYPNGFRT NRATRAGYWK STGKDRRVVH QHGGRAIGMK KTLVYYRGRA PQGVRTDWVM  240
HEYRLDDKDC EDTMPIQDTY ALCRVFKKNA ICTEVEELQG QCSMALLEGA CQQLLASSGG  300
GGQEQYETPS PPDVPVGSTS GGADADAEDD PDKDDSWMQF ISDDAWCSST ADGGAEESTS  360
CVALAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-51	112	268	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612702.2	0.0	NAC domain-containing protein 86
Swissprot	A4VCM0	2e-82	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A0E0EUN3	0.0	A0A0E0EUN3_9ORYZ; Uncharacterized protein
STRING	OMERI09G14320.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-113	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]