PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G12750.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 211aa    MW: 23341.2 Da    PI: 6.1606
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G12750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-08333434
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+ +e+ ++ lfC  ++  lC++C ++ H
  OMERI09G12750.1  3 TICDVCESAPAVLFCVADEAALCRSCDEKVH 33
                     68**************************998 PP
2zf-B_box27.95e-095291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  OMERI09G12750.1 52 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                     6799*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.424147IPR000315B-box-type zinc finger
CDDcd000213.63E-8345No hitNo description
PfamPF006437.0E-7342IPR000315B-box-type zinc finger
PROSITE profilePS501199.5275196IPR000315B-box-type zinc finger
SMARTSM003364.0E-115196IPR000315B-box-type zinc finger
PfamPF006434.6E-75291IPR000315B-box-type zinc finger
CDDcd000211.22E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCVAD EAALCRSCDE KVHMCNKLAR RHVRVGLADP NKVQRCDICE  60
NAPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLMQR VEFPGDKPGH MDDVAMQQKD  120
PENRTDQKKA PHSVTKEQMA NHHNVSDDPA SDGNCDDQGN IDSKMIDLNM RPVRTHGQGS  180
NSQTQGVDVS VNNHDSPGVV PTCNFEREAN K
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221720.0AK122172.1 Oryza sativa Japonica Group cDNA clone:J033148H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651327.11e-156B-box zinc finger protein 18
SwissprotC0SVM51e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0E0EU251e-156A0A0E0EU25_9ORYZ; Uncharacterized protein
STRINGOMERI09G12790.11e-156(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-76DBB family protein