PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G12490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 25577.3 Da PI: 4.6731 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 49 | 99 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 + ++GVr++ + grWv+e+r+p g + r +lg+f+tae+Aa+a++aa++++ OMERI09G12490.1 49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 99 579******************9...6445**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-13 | 49 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.744 | 50 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-14 | 50 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-24 | 50 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-15 | 50 | 100 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.67E-17 | 51 | 116 | No hit | No description |
PRINTS | PR00367 | 6.7E-5 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-5 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MCGIKQEMSG ESSGSPCSSA SAEQRHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA 60 GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGACC LNFADSAWLL 120 AVPRSYRTLA DVRHAVAEAV EDFFRRRLAD DALSATSSSS TTPSTPRTDD EDDEESAATD 180 GDESSSPASD LAFELDVLSD MGWDLYYASL AQGMLMEPPS AALGDDGDAI LADVPLWSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF300970 | 0.0 | AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds. | |||
GenBank | AK287692 | 0.0 | AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence. | |||
GenBank | AP006859 | 0.0 | AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | JQ885956 | 0.0 | JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610912.1 | 1e-142 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | A2Z389 | 1e-143 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | A0A0E0ETZ1 | 1e-172 | A0A0E0ETZ1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI09G12560.1 | 1e-173 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-35 | C-repeat/DRE binding factor 2 |