PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G12430.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 375aa MW: 37969.2 Da PI: 4.8666

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G12430.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.3	4.2e-32	116	204	5	94
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 r+ ++h kv+gR+RR+R++++caar+ +L++eLG+++d++ti WL+qq++pai ++tgt++ +a ++ +++ + ++s ++aa+ + OMERI09G12430.1 116 PPRNRDRHVKVEGRGRRIRMPVNCAARIAQLTRELGHKSDGETIRWLMQQSEPAIVAATGTGTVPAIAT-TVDGVLRIPTESPSAAARGD 204 5799*********************************************************99999444.44444444433333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.0E-26	119	198	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.128	119	173	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MASQLQGKGA EAAAAGERVA PGTNAAAFAG FGYPPIQSPV ALQEEEGPRD AAFAGYAPPI 60 RSPVVSRLQG EGEGEKREEA GVAADGSAFA AGMALVPKPE PVAVEFLRGL AVAKPPPRNR 120 DRHVKVEGRG RRIRMPVNCA ARIAQLTREL GHKSDGETIR WLMQQSEPAI VAATGTGTVP 180 AIATTVDGVL RIPTESPSAA ARGDEPAPKR RRKLQPTRAA AGGPVEALAT APPPAVYYPI 240 VADPLLQANG GGSISISSGL APTSSATAPA ATGGGGAIPF IAMPASSDGG KQAMSPATVW 300 MVPPSGAGAV NQPIQYWAFQ PNPDHANFAG ASNYSVGQNP GVQEASASDQ AASTGGGGGE 360 DDEYEGTTDS SSDEE

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MASQLQGKGA EAAAAGERVA PGTNAAAFAG FGYPPIQSPV ALQEEEGPRD AAFAGYAPPI  60
RSPVVSRLQG EGEGEKREEA GVAADGSAFA AGMALVPKPE PVAVEFLRGL AVAKPPPRNR  120
DRHVKVEGRG RRIRMPVNCA ARIAQLTREL GHKSDGETIR WLMQQSEPAI VAATGTGTVP  180
AIATTVDGVL RIPTESPSAA ARGDEPAPKR RRKLQPTRAA AGGPVEALAT APPPAVYYPI  240
VADPLLQANG GGSISISSGL APTSSATAPA ATGGGGAIPF IAMPASSDGG KQAMSPATVW  300
MVPPSGAGAV NQPIQYWAFQ PNPDHANFAG ASNYSVGQNP GVQEASASDQ AASTGGGGGE  360
DDEYEGTTDS SSDEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	213	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006175	0.0	AP006175.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0669G04.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612634.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	2e-83	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	2e-83	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A0E0ETY5	0.0	A0A0E0ETY5_9ORYZ; Uncharacterized protein
STRING	OMERI09G12500.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-41	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]