PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G12160.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 381aa MW: 40726.5 Da PI: 6.6549

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G12160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	5.8e-11	184	242	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l+ l+ + l++e+ OMERI09G12160.1 184 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSLLQRDTSGLTTEN 242 9***********************************************99988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-16	180	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	182	245	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-9	184	242	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-10	184	239	No hit	No description
SuperFamily	SSF57959	7.03E-11	184	235	No hit	No description
CDD	cd14703	3.63E-23	185	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MNREKSPIPG DGGDGLPPQS ARRAGPPAAA AAAAAEYDIS RMPDFPTRNP GHRRAHSEIL 60 SLPEDLDLCA GGGGDGPSLS DENDEELFSM FLDVEKLNSS CGASSEVEAE SSSAGAAAAA 120 AAAAAAAHGA RPKHQHSLSM DESMSIKAEE FVGASPGTEG MSSAEAKKAV SAAKLAELAL 180 VDPKRAKRIW ANRQSAARSK ERKMRYIAEL ERKVQTLQTE ATTLSAQLSL LQRDTSGLTT 240 ENSELKLRLQ TMEQQVHLQD ALNDTLKSEV QRLKVATGQM ANGGGMMMNF GGMPHQFGGN 300 QQMFQNNQAM QSMLAAHQLQ QLQLHPQAQQ QQVLHPQHQQ QQPLHPLQAQ QLQQAARDLK 360 MKSPMGGQSQ WGDGKSGSSG N

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MNREKSPIPG DGGDGLPPQS ARRAGPPAAA AAAAAEYDIS RMPDFPTRNP GHRRAHSEIL  60
SLPEDLDLCA GGGGDGPSLS DENDEELFSM FLDVEKLNSS CGASSEVEAE SSSAGAAAAA  120
AAAAAAAHGA RPKHQHSLSM DESMSIKAEE FVGASPGTEG MSSAEAKKAV SAAKLAELAL  180
VDPKRAKRIW ANRQSAARSK ERKMRYIAEL ERKVQTLQTE ATTLSAQLSL LQRDTSGLTT  240
ENSELKLRLQ TMEQQVHLQD ALNDTLKSEV QRLKVATGQM ANGGGMMMNF GGMPHQFGGN  300
QQMFQNNQAM QSMLAAHQLQ QLQLHPQAQQ QQVLHPQHQQ QQPLHPLQAQ QLQQAARDLK  360
MKSPMGGQSQ WGDGKSGSSG N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102795	0.0	AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612692.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	0.0	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A0E0ETU9	0.0	A0A0E0ETU9_9ORYZ; Uncharacterized protein
STRING	OMERI09G12160.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	7e-80	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]