PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G11680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 700aa    MW: 77134.1 Da    PI: 4.4995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G11680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.56.8e-46111432128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp+  ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd++++
  OMERI09G11680.1  11 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSIC 102
                      8*********************9999555..6**************9435778899************************************** PP

              NAM  94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +       +g++vg kktLv+++grap+ge+tdWvmhey+l
  OMERI09G11680.1 103 NGggggaaSGRAVGSKKTLVYHHGRAPRGERTDWVMHEYTL 143
                      *98877777777***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-517166IPR003441NAC domain
PROSITE profilePS5100551.37510166IPR003441NAC domain
PfamPF023653.3E-2411143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MGMENPPLRW PPGFRFSPTD EELVLYFLKR RIATGRPTPY IADVDVYKSH PSHLPERSAL  60
RTGDKQWFFF SRMDRKYPNG SRASRTTGEG YWKATGKDRS ICNGGGGGAA SGRAVGSKKT  120
LVYHHGRAPR GERTDWVMHE YTLLADALPP AARDREVYAL YKLFHKSGAG PKNGEQYGAP  180
FREEDWLDDD DDQLPAEAAL PAPATTSGRA AATEEHADFE LPGGDLDVLL AQIENDQDII  240
EPRLDFSTHV TSQVQIQHRV HQGWASDDGG KSDVADATTS GSALLMAENT CAELPIDGLE  300
QLLMQISDDQ QTVEMFSGFS ASVPQSQLQH DDHQDCLGVH REEVGVADST TVSSAVVTEE  360
CTVRELQDIE GLLMQIENDQ ENVESLPDFS TPVHLHDCHQ VAFGDFQGSQ RTTFSIANLS  420
TMVHENPNFD LQTGLSNQIA ESILTTEPMN GETNAMEETS ALRSMSVLGN YDRQGVDDEF  480
LEINDFFDPE PEDLEQILGS TSQNLIPADD GVFDSLQYSD APMFLPGSFD TTGVMAENHY  540
VEFGASGIQN QGFQHTTELW VHNQVALNVR NHMKDNHVVF SHSSDSSIIH TVNEQPSNRS  600
SNASQSWFNA TLSALLDSVP SSPAMAAENI GLNRTLQRIS SFRSQQPARE EVSSTLINTR  660
RRGGGLIFIS LMVLLVAITW TFSNGSAVKL SKGLWKFSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-43814313140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685010.0AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence.
GenBankAK0992370.0AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611740.10.0NAC domain-containing protein 17 isoform X1
TrEMBLA0A0E0ETL50.0A0A0E0ETL5_9ORYZ; Uncharacterized protein
STRINGOMERI09G11540.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.11e-59NAC domain containing protein 16