PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G10920.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 201aa MW: 21334.3 Da PI: 5.2621

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G10920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.8	3.3e-53	59	162	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdf OMERI09G10920.1 59 QLQMFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDF 152 89****99999***************************************************************************** PP NF-YC 92 lvdivprdel 101 lvdivprd+ OMERI09G10920.1 153 LVDIVPRDDA 162 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.38E-31	58	153	IPR009072	Histone-fold
Pfam	PF00808	3.6E-21	81	144	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-36	82	159	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDPTKSSTPP PVMGAPVGFP PGAYPPPPPA GAAAAAYAQQ LYAPPAAAAA QQAAAAQQQL 60 QMFWAEQYRE IEATTDFKNH NLPLARIKKI MKADEDVRMI AAEAPVVFAR ACEMFILELT 120 HRGWAHAEEN KRRTLQKSDI AAAIARTEVF DFLVDIVPRD DAKDADAAAA AAAAAAAAGI 180 PRPAAGVPAT DPLAYYYVPQ Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-56	67	159	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	137	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005392	0.0	AP005392.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0463D04.
GenBank	AP005633	0.0	AP005633.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0463G11.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611933.1	1e-96	nuclear transcription factor Y subunit C-6-like
Swissprot	Q9XE33	3e-76	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A0E0ETA1	1e-138	A0A0E0ETA1_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0ILC5	1e-138	A0A0E0ILC5_ORYNI; Uncharacterized protein
STRING	OMERI09G10750.1	1e-139	(Oryza meridionalis)
STRING	ONIVA09G14690.1	1e-139	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-57	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]