PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G10560.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 1076aa    MW: 117769 Da    PI: 8.0509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G10560.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.32.5e-17827876255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OMERI09G10560.4 827 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 876
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.862348378IPR002885Pentatricopeptide repeat
PfamPF015350.21353379IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.449379413IPR002885Pentatricopeptide repeat
PfamPF015350.22381406IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.117482518IPR002885Pentatricopeptide repeat
PfamPF130415.3E-9482531IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-5485510IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.684554584IPR002885Pentatricopeptide repeat
PfamPF015350.01559582IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0018559583IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.553587621IPR002885Pentatricopeptide repeat
PfamPF130412.2E-11587633IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.7E-7589622IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.366622657IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.303658688IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.103726760IPR002885Pentatricopeptide repeat
SuperFamilySSF474591.44E-18822893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-23823896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.62E-16823880No hitNo description
PROSITE profilePS5088816.952825875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-15827876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13831881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPSPSQ GFFLRTHDFL QPLEKPTPAP  60
APPPTSQQQQ QAFPGGIGTF SISHVAGARP VAAAVVKAEP TPFVLWGQPA AAAAAAAHPV  120
AALGHHHHHH HQWTLPFAGV GQVAATAARQ QQQERKGRVG GGGFMDSGSR SSGGAGFDDD  180
DGVAARREVS SSLKERRREG RGEEGRRRSR GLMEMEMEME MYSRCARPSH IHQLHARLVV  240
SGRLRCSSPS LALLRAACRV RASPCLRPLV HHLLDHVPRP HPHLLHAAAR LAYRLRLPSL  300
ALRHFVALRT HHPAFLPPAA AIADMLKSVR GRAAHAHALR VTAHAGDTRF LDNTLIAMYF  360
ACGDIQRARL VFEGMRDRDV ISWTSLISGL VQNGSPLQGI QQFATMMHCD VRPDFVVLVT  420
IAKAFMELDN LPGAESAHSL VVKGGFHDEQ DVMITLTAMY ASFGCLVAAR ALFDMVPPQQ  480
VNVILWNAMI SGYSKNGFAS EAVHLFKHMQ LVARNLAPDS ITLRSVIFAC AQLGSTELVA  540
WMEDCVCRSE YREDVLVNTA LIDMYAKSGS ISHARAVFER MHVDDRDVVV WSALITGYGV  600
QGLVNEACTL FQDMKLAGVR PNDVTFLGLL SACNHAGAVE KGWSYFHSMK PDYGIEPQHQ  660
HYACMVDLLS RAGQLDRAYQ FILNMPIKPE MTVWGALLHG CKMHGHSNMA MAECAAQHIF  720
ELEQSNAGHY VQLANMYASA GMWSQVAGMR VTMRERGVTK VTGCSFIEVD GEMHSFHAWD  780
HSHPRATEIF AMLCLLSPTP AGGEMRVDGK GGSCSGSGTD QRPSSPRSKH SATEQRRRSK  840
INDRFQILRE LLPHSDQKRD KATFLLEVIE YIRFLQEKVQ KFEASVPEWN QENAKILPWS  900
KGQNPGDDLP DPSQFIRNGS SSGYNFTGKP DDNHNMVTSA AASGAAELVE TDRAASVSYR  960
SAETPTNITN NVTSQAQAQW ASPAGVDDCA MNSEMLNNQQ LAIDEGTISL SSQYSQQLLG  1020
TLTHALESSG VDLSQASISV QINLGKRAVK RPGADGSSSS KLGNPLHRRR FIELQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-4935370217330PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018960.0AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
TrEMBLA0A0E0ET440.0A0A0E0ET44_9ORYZ; Uncharacterized protein
STRINGOMERI09G10400.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.19e-51BES1-interacting Myc-like protein 2