PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G07770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 25707.3 Da PI: 6.5143 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116 | 4.8e-36 | 73 | 159 | 3 | 88 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+ +sss+ ++ + sss +as+++sg OMERI09G07770.1 73 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADSSSHR-AAgdTRMSSSPAASAERSG 159 689************************************************************55555.2222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 34.922 | 74 | 132 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.7E-34 | 74 | 156 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MQQQLDQQQQ QQHQYDHFFS GHGQFNSETL EAVLCRPPRG AAADPAVPAA AIPAARNGGA 60 GGGGHGRARK RPFRTDRHSK IRTAQGVRDR RMRLSLDVAR DFFALQDRLG FDKASKTVDW 120 LLTQSKPAID RLAADSSSHR AAGDTRMSSS PAASAERSGD HHMVAVGAAG SGKGDADKAR 180 GPRGGRSAPM ELGCELGRLV PAPVLGEYYY ELAEMMSNNT GGEGDDDGDY DDDGDFLDAL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005093 | 0.0 | AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | EU702407 | 0.0 | EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611514.1 | 1e-118 | transcription factor TB1-like | ||||
TrEMBL | A0A0E0ES36 | 1e-173 | A0A0E0ES36_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI09G07590.1 | 1e-172 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 5e-27 | TCP family protein |