PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G03940.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 380aa    MW: 39679.7 Da    PI: 7.6643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G03940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.6e-05187206120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C  C+k+F+r  n++ H+
  OMERI09G03940.1 187 FSCAVCNKTFNRFNNMQMHM 206
                      89*****************9 PP
2zf-C2H213.60.0002278300123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C  Cgk+F  + + ++H +++
  OMERI09G03940.1 278 YACRRCGKRFAVRGDWRTHEKNC 300
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.9E-5182208No hitNo description
SMARTSM003550.64187209IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-5187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SMARTSM00355230241273IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6264298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-6264298No hitNo description
SMARTSM0035558278298IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MHPHLYQSHH HHQHVAPPTK HGGGGGGAGG EEDDQSMLLL SLWPPGHSSH HHHHHGGASS  60
SACSSASISA ATAAAHSGGG GGGGHGAAAA ASSWFNPSHY HGGGGGGGGF LFQEQQEPNV  120
SISLSIAPPC GGGNAAAMAA AGSFASSPLP QQPVASSAVA TPPGGGQAPS QYWIPSAAEI  180
LVGSTQFSCA VCNKTFNRFN NMQMHMWGHG SQYRKGAESL RGAITVGGAA PPASLMRLPC  240
YCCAEGCRNN VEHPRARPLK DFRTLQTHYR RKHGARPYAC RRCGKRFAVR GDWRTHEKNC  300
GKLWFCVCGS DFKHKRSLKD HVRSFGGGHA PHIVESSSTS AAAAAGCADD DDDDYYDDDD  360
DTVSLSRATS AHDDADMIVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0062350.0AP006235.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0017N10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876264.10.0zinc finger protein WIP6
TrEMBLA0A0E0EQL70.0A0A0E0EQL7_9ORYZ; Uncharacterized protein
STRINGOMERI09G03610.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.12e-96C2H2-like zinc finger protein