PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G03740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 501aa    MW: 53439.4 Da    PI: 6.5991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G03740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.1e-21171528126
              NAM   8 hPtdeelvveyLkkkvegkklelee........vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkat 86 
                      hPt++el++ yL++++   +++ +         +i+++d y ++P dL +     +++ +++ wyfFs+ ++++++g+r+ ra++  +g W++ 
  OMERI09G03740.1  17 HPTEQELITSYLHHRLLLATTKPAGagvggvpsFIHHADAYAADPADLTArhlpaRAADGSRAWYFFSPVRTTTERGTRRARAVEsgDGCWHSE 110
                      9**************8887744323456666657**************84466666666888********************87744788**** PP

              NAM  87 gkdkevlskkgelvglkktLvfykgrapkge..ktdWvmhey 126
                         ++v+++ g+ vg ++ + f k+r+++g+  +t W+m e 
  OMERI09G03740.1 111 SGVRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVEL 152
                      ***********************99999887558*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.31110174IPR003441NAC domain
SuperFamilySSF1019416.54E-3117174IPR003441NAC domain
PfamPF023655.7E-1217152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MADADADACP AVFASRHPTE QELITSYLHH RLLLATTKPA GAGVGGVPSF IHHADAYAAD  60
PADLTARHLP ARAADGSRAW YFFSPVRTTT ERGTRRARAV ESGDGCWHSE SGVRAVVDAA  120
GRRVGHRQFF SFVKKREEDG KRVRTGWLMV ELGLDNDASA SCSNELVLCK IYMTPRMPPP  180
SPPRAVTSSA ATMELMPLPR VPPPSPPSAV TSATTTTMEL MAGGVHKRRK ISDEIAAAAT  240
SPPPQQQRRQ RCVPDNDGSK ESSGESSVVI LDDDDDDADA LEDGGAVRSK PRSDDGVMLP  300
DAREDDEQHA GTTDSMAGTS GGAVTGGGHG KILPDLNVVA TVAPDHEDEE GRHARDAPRR  360
RQDGGTSTTT MMVAGAGAER GSTTGYLPAA AAGYRRTLML FLEEEDDNNA VEDEQQQPAP  420
PPPVTSTTRT SVEANLQLQQ RQRQTPCCTF VVHPCAAHAK MRHGAAYGCG CRVTGTIRRG  480
GYHLPRRAVH TTTTTTTTTG Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611524.10.0PH domain leucine-rich repeat protein phosphatase 1
TrEMBLA0A0E0EQJ20.0A0A0E0EQJ2_9ORYZ; Uncharacterized protein
STRINGOMERI09G03410.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1745799