PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G03700.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 235aa MW: 25912.7 Da PI: 8.8046 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.6 | 7.5e-30 | 33 | 83 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQ OMERI09G03700.3 33 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQ 83 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 30 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-13 | 33 | 86 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-21 | 33 | 84 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.5E-7 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.4E-22 | 113 | 158 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MFPPGLIHHR PDGGEAGRAA GGGPSLVLTA DPKPRLRWTA DLHERFVDAV AQLGGPEKAT 60 PKTILRTMGV KGLTLFHLKS HLQYSYLSLI FLDQKYRLGK QSGKEASEQS KDEVKEALRA 120 QMEMQRRLHE QVEVQKHVQI RMEAYQKYID TLLEKACKIV SEQLASSGFS ISDNDLPELS 180 GGVMCGSADT LSSSIFHQLS VSPINLHSPE GKPTPSGIEG QMILQKSPEL KRKSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-17 | 33 | 83 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 33 | 83 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 33 | 83 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 33 | 83 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 33 | 83 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069336 | 0.0 | AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611986.1 | 1e-145 | protein PHR1-LIKE 2 | ||||
Swissprot | Q94A57 | 1e-59 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A0E0EQI7 | 1e-172 | A0A0E0EQI7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G05270.1 | 1e-145 | (Oryza glumipatula) | ||||
STRING | OMERI09G03370.1 | 1e-145 | (Oryza meridionalis) | ||||
STRING | ORUFI09G05100.1 | 1e-145 | (Oryza rufipogon) | ||||
STRING | ONIVA09G04720.1 | 1e-145 | (Oryza nivara) | ||||
STRING | OBART09G04520.1 | 1e-145 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 9e-62 | G2-like family protein |
Publications ? help Back to Top | |||
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