PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G18580.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 657aa    MW: 71963.7 Da    PI: 4.3758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G18580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-53221491128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv++yLk+kv+g++l++ ++i+evd+ykvePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgkd+ev
  OMERI08G18580.1  22 LAPGFRFHPTDEELVSYYLKRKVHGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREV 114
                      579***************************.99***************4357888999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + + ++vg+kktLvf+ grapkge+t+Wvmheyrl
  OMERI08G18580.1 115 RN-GPTTVGMKKTLVFHAGRAPKGERTNWVMHEYRL 149
                      *9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6015169IPR003441NAC domain
PROSITE profilePS5100558.57622169IPR003441NAC domain
PfamPF023656.7E-2924149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MSHPSSSSSS APPAAAAEAT SLAPGFRFHP TDEELVSYYL KRKVHGRPLK VDAIAEVDLY  60
KVEPWDLPAR SRLRSRDSQW YFFSRLDRKH ANRARTNRAT AGGYWKTTGK DREVRNGPTT  120
VGMKKTLVFH AGRAPKGERT NWVMHEYRLD GQTAIPPQDS FVVCRIFQKA GPGPQNGAQY  180
GAPFVEEEWE EDDEDVGLLP VEEKDNSDDQ EKEISGAMEK GYLQMSDLVQ NLGDQNENGT  240
IALPVSDNSN NSNHSEDVDG NSGDILSDQN LGSNFLHYVE PVEQNGLVLN ENMFSSANAG  300
DLFNRSSPND GFLELKDFAD IADLENPLAN ESTIWPSDGW PWKSTDSMEA VNGASNEFSP  360
LAGEQTFQPE ELEQLLKSLQ EDSHMGSTIS DPPHSSITNL AKPEEDCLMF YDAPFDSSMC  420
DDGFRQLNGF LGSPSTNLSG IDMVDDGMPY YDAMDDNLFN DLLSSVQPSA GSSSHAFSGP  480
VLTQEVNNTT YTYSPTQKVL EPNFVVGAPS SARLPEAGSQ LNYVVLPDSQ TKSSLIGKRF  540
VKILDSISAP PAFAAAEFPA SLRKSLAPIS GAHHNTIRVS AEVISIGSLT PASQDKWSLE  600
KDEGMELLFS AGFEPDTRVH FGCNTITAVL RGGFCLFFFS AIMLLVSYEV GMCIYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-47171699168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996290.0AK099629.1 Oryza sativa Japonica Group cDNA clone:J013057D07, full insert sequence.
GenBankAK1207730.0AK120773.1 Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence.
GenBankKF2802620.0KF280262.1 Oryza sativa Japonica Group NAC transcription factor (NAC40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649510.10.0uncharacterized protein LOC4346333
TrEMBLA0A0E0EP380.0A0A0E0EP38_9ORYZ; Uncharacterized protein
STRINGOMERI08G18450.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-72NAC domain containing protein 2