PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G17540.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 302aa    MW: 30717.9 Da    PI: 8.4242
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G17540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.81.2e-67912313154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                       gt+sCqdCGnqakkdC+h RCRtCCksrgfdCathvkstWvpaakrrerq+ la+a         +++skr+r++   +++++++ ++ss+e+
  OMERI08G17540.1  91 GGTISCQDCGNQAKKDCTHLRCRTCCKSRGFDCATHVKSTWVPAAKRRERQNLLASA---------AESSKRPRDS--VAAATSTTPTTSSGEQ 173
                      6899***********************************************999986.........6788999997..5566666778899*** PP

           DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++  +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G+e+
  OMERI08G17540.1 174 QQMMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTTVSIAGHVFKGILHDVGPEH 231
                      ********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.3E-5993230IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.0E-2795137IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-23181229IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGFPLGGGG GRHGRDDHHR PPVNPTDSAA AFLYPSTASR GGFQLWQQQP PPAAHPFYAQ  60
NIIRFADDPA APPSSRGGRG GGPGGAGGSG GGTISCQDCG NQAKKDCTHL RCRTCCKSRG  120
FDCATHVKST WVPAAKRRER QNLLASAAES SKRPRDSVAA ATSTTPTTSS GEQQQMMVGE  180
RFPREVSSEA VFRCVRLGPV DEADAEVAYQ TTVSIAGHVF KGILHDVGPE HSSGGGGMGG  240
RHAAAGEAGS SPSTAAAPHG GGEGGSSGVA AAAAVSSSAV VMDPYPTPGP FGGAHFFHGH  300
PR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047040.0AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09.
GenBankAP0062650.0AP006265.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_E06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648772.11e-144protein SHI RELATED SEQUENCE 1
TrEMBLA0A0E0ENP40.0A0A0E0ENP4_9ORYZ; Uncharacterized protein
STRINGOMERI08G17280.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.19e-49Lateral root primordium (LRP) protein-related