PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G17370.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 406aa    MW: 42746.4 Da    PI: 5.1632
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G17370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.3e-1753105155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+ a+ Aa+a++aa+++l+g
  OMERI08G17370.1  53 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFDAADAAARAHDAAMLALRG 105
                      579******************9...6445*************************98 PP
2AP260.73.4e-19209261155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++ + grWv+e+r+p   g +  r ++g+f+taeeAa+a++aa+++l g
  OMERI08G17370.1 209 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 261
                      579******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1253105IPR001471AP2/ERF domain
SMARTSM003805.5E-1654119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2254108IPR001471AP2/ERF domain
PROSITE profilePS5103219.53354113IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1454108IPR016177DNA-binding domain
PfamPF008473.2E-14209261IPR001471AP2/ERF domain
SMARTSM003803.6E-21210275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-27210271IPR001471AP2/ERF domain
PROSITE profilePS5103220.455210269IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-18210271IPR016177DNA-binding domain
PRINTSPR003676.2E-5211222IPR001471AP2/ERF domain
CDDcd000181.19E-19223271No hitNo description
PRINTSPR003676.2E-5235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MCTRKLEEIT GEWPPPALQA ASTTSSSEPC RRLSPPSSKR PAGRTKFHET RHPVFRGVRR  60
RGRAGRWVCE VRVPGRRGCR LWLGTFDAAD AAARAHDAAM LALRGRAAAS SSSMTDADEE  120
AEASPFELDV VSDMGWSLYY ASLAEGLLME PPASGASSDD DDDAIVDSGD IADNTTAMGQ  180
LMSSSSTATG PASPKRPAGR TKFQETRHPV FRGVRRRGRA GRWVCEVRVP GSRGDRLWVG  240
TFDTAEEAAR AHDAAMLALC GASASLNFAD SAWLLHVPAV SSHDQLPDVQ RAASEAVAEF  300
QRRGSTAATA TATSGDAAST APPSSSPVLS PNDDNASSAS TPAAAAALDN GMFHGDMFGG  360
MRADLYYASL AQGLLIEPPP PPPPPTTVEG CCDDEGCGGA EMELWS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041630.0AP004163.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1323_A06.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649414.11e-108dehydration-responsive element-binding protein 1J
SwissprotA2YXQ71e-110DRE1J_ORYSI; Dehydration-responsive element-binding protein 1J
TrEMBLA0A0E0ENM00.0A0A0E0ENM0_9ORYZ; Uncharacterized protein
STRINGOMERI08G17090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-19C-repeat/DRE binding factor 2