PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G17330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 370aa MW: 38371.6 Da PI: 5.2244 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.5 | 4e-37 | 71 | 170 | 6 | 94 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg... 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ ++sssss g OMERI08G17330.1 71 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvlriPTQSSSSS------Gpas 158 6999********************************************************666663333222222211112222......1222 PP TCP 89 .......kaaksa 94 + ++++ OMERI08G17330.1 159 savvdgeE-SSAK 170 22233221.1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-30 | 73 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.381 | 73 | 127 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MEAQAQDKAE EGEEEGTRQQ HAQAGPVGAA AGGGGAAAVA MSAIPMNSWL VPKPEPVEFF 60 GGMAMVRKPP PRNRDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIRWLLQQS 120 EPAIIAATGT GTVPAIATTV DGVLRIPTQS SSSSGPASSA VVDGEESSAK RRRKLQPTRA 180 VAGASPLATA APAAYYPVIA DPLLQGSGGA AISVPSGLAP ITATGAPQGL VPVFAVPATG 240 SPAVAGGNRM IPQATAVWMV PQPAGAAGAG NQPTQFWAIQ SAPQLVNFAG AQFPTAINVA 300 DFQQQQQQPV STTIVQNSNS GEHMHFSGAD SHEQQRRGRK EGNSRGVVDH PEEDEDDDDD 360 EPVSDSSPEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648330.1 | 0.0 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 0.0 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 0.0 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A0E0ENL4 | 0.0 | A0A0E0ENL4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G17040.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 2e-45 | TCP family protein |
Publications ? help Back to Top | |||
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