PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G15890.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 320aa    MW: 36792 Da    PI: 10.6918
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G15890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-16958148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd +l+ +v+q+G++ W++++++m+  ++R +k+c +rw +yl
  OMERI08G15890.1  9 RQRWRPEEDAILLAYVRQHGPREWSLVSQRMNrpLHRDAKSCLERWKNYL 58
                     89**********************************************97 PP
2Myb_DNA-binding34.25.9e-1164108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  OMERI08G15890.1  64 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 108
                      57789*****************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.736158IPR017930Myb domain
SMARTSM007171.9E-13860IPR001005SANT/Myb domain
SuperFamilySSF466898.46E-219103IPR009057Homeodomain-like
CDDcd001671.18E-71158No hitNo description
Gene3DG3DSA:1.10.10.601.8E-201165IPR009057Homeodomain-like
PfamPF139211.2E-131272No hitNo description
PROSITE profilePS5129422.39159113IPR017930Myb domain
SMARTSM007171.4E-963111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-1566107IPR009057Homeodomain-like
CDDcd001671.40E-568109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MQPPPMRERQ RWRPEEDAIL LAYVRQHGPR EWSLVSQRMN RPLHRDAKSC LERWKNYLRP  60
GIKKGSLTDD EQRLVIRLQA KHGNKWKKIA AEVPGRTAKR LGKWWEVFKE KQQRELRDRR  120
RLPPPPADDE GGGRGRYDWL LEDFADKLVN DHHRRMMAAP ILPPWMSSSP SSSSSPSVTL  180
SLASAAAVAP APAPTPPTEM EEGQRAWAAH RKEAAWRMKR VEMQLETERA CRRREAAEEF  240
EAKMRALREE QAAAVERVEA EYREKMAGLR RDAEAKEQKM AEQWAAKHAR LAKFLDQVAA  300
CRRWPPVEIN GGPSGAGGGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-1412106798MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-1412106798C-Myb DNA-Binding Domain
1msf_C1e-1412106798C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0645190.0AB064519.1 Oryza sativa Japonica Group OsRS2 mRNA for transcription factor rough sheath 2 like protein, complete cds.
GenBankAB0716000.0AB071600.1 Oryza sativa Japonica Group gene for transcription factor OsRS2, complete cds, cultivar:Nipponbare.
GenBankAL7724250.0AL772425.7 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620377.11e-180protein rough sheath 2 homolog
SwissprotQ94IB10.0RS2_ORYSJ; Protein rough sheath 2 homolog
TrEMBLA0A0E0EN030.0A0A0E0EN03_9ORYZ; Uncharacterized protein
STRINGOMERI08G15550.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.17e-65MYB family protein