PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G14710.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 359aa MW: 36776.2 Da PI: 6.717

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G14710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g+W+t +r g++R++k+c++rw +yl OMERI08G14710.1 14 KGPWTPEEDEKLLHYIQKNGHGSWRTLPRLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.1	1.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l OMERI08G14710.1 67 RGKFSQEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.45	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-11	16	61	No hit	No description
PROSITE profile	PS51294	26.796	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.54E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDEKLLHYIQ KNGHGSWRTL PRLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKRLIQMG 120 FDPMTHRPRT DFFAALPQLI ALATLRGQLA ATACGGGGGG DPAAAAAQIM QGAGGGGGGG 180 GGGADVAIQA AKMQYLQCLL QSAASTIASA GSGGGAAMSA HDADAALAAA AAAATCSSSP 240 AGSSVPITPT AVGHSVGGQT QTTPCAFSEA PVITSDDVEA NLRLLGCGGG GADAFACHGG 300 SLPPLADLSD VTTTTMTNPL DWCSATASSS CGGGGGGGAS SPFPWPEFFH DDPFITDFL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGRSPCCDES GLKKGPWTPE EDEKLLHYIQ KNGHGSWRTL PRLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKRLIQMG  120
FDPMTHRPRT DFFAALPQLI ALATLRGQLA ATACGGGGGG DPAAAAAQIM QGAGGGGGGG  180
GGGADVAIQA AKMQYLQCLL QSAASTIASA GSGGGAAMSA HDADAALAAA AAAATCSSSP  240
AGSSVPITPT AVGHSVGGQT QTTPCAFSEA PVITSDDVEA NLRLLGCGGG GADAFACHGG  300
SLPPLADLSD VTTTTMTNPL DWCSATASSS CGGGGGGGAS SPFPWPEFFH DDPFITDFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-31	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004376	0.0	AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883226.1	0.0	transcription factor MYB93
Swissprot	Q9S9Z2	2e-97	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0E0EMJ4	0.0	A0A0E0EMJ4_9ORYZ; Uncharacterized protein
STRING	OMERI08G14420.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-93	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]