PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G14660.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1629aa    MW: 175390 Da    PI: 7.1896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G14660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013725747123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  H  +H
  OMERI08G14660.2 725 FECPVCNKTFEEQSRYFGHVGSH 747
                      89************999987665 PP
2zf-C2H211.10.001311111133123
                       EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2    1 ykCpdCgksFsrksnLkrHirtH 23  
                       ++Cp C+k+F  +s +  H  +H
  OMERI08G14660.2 1111 FECPVCNKTFEEQSRYFGHVGSH 1133
                       89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.429182255IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.5E-6186237IPR016177DNA-binding domain
PfamPF014294.5E-5192235IPR001739Methyl-CpG DNA binding
PROSITE profilePS5098210.023550623IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.41E-6554605IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.109.6E-4555604IPR001739Methyl-CpG DNA binding
PfamPF014294.2E-5560603IPR001739Methyl-CpG DNA binding
SMARTSM003550.41676699IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280678699IPR007087Zinc finger, C2H2
SMARTSM003550.023725747IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328725752IPR007087Zinc finger, C2H2
PROSITE patternPS000280727747IPR007087Zinc finger, C2H2
SuperFamilySSF576678.16E-510611133No hitNo description
SMARTSM003550.4110621085IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010641085IPR007087Zinc finger, C2H2
SMARTSM003550.02311111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.32811111138IPR007087Zinc finger, C2H2
PROSITE patternPS00028011131133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1629 aa     Download sequence    Send to blast
METEVFPVVD LRVLTQSDLD ELATASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP  60
AAAAAAAAAA ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSSPQTQT LALPAPPSPD  120
PDQLTTNSRG VSVDLVGLSR LADPYDAELG KRTAGMTTEE ELMGFISSLA GQWVSQRMRR  180
KLVDASFFGD HLPSGWRLQL GIKRKDRKAW VNCFSYVSPK GQSFATCQEV SAYLMSLLGY  240
PEFKTDNIEC GSTQQHGLCA DDGVNTCSTI SSTVHPQPDA DATATCPPLL TKVTVHSPTQ  300
LRRRHLIPPA SDTVASHRSS DRRSGARHLI PPASDTVASH LRAPIAAAAV ASPEQKPRVV  360
GKAEGRGSME TEVFPVVDLR VLTQSDLDEL ATASAHAVDP RSSCPDRAVF NESAGSRKQT  420
FSRVRFVPAA AAAAAAAAAS AAAAAKLPRG NDKEDSFIAY HLRRLFAPDD PSSPQTQTLA  480
LPAPPSPDPD QLTTNSRGVS VDLVGLSRLA DPYDAELGKR TAGMTTEEEL MGFISSLAGQ  540
WVSQRMRRKL VDASFFGDHL PSGWRLQLGI KRKDRKAWVN CFSYVSPKGQ SFATCQEVSA  600
YLMSLLGYPE FKTDNIEYGS TQQHGLCADD GVNVLGVQHQ IGTGMDSQSI LPVASITFSS  660
HSRDQDETDA DDINSYECQQ CNLTFHGQSA YAHHLITFHK MGSKRRKINK VGKFGEPVIG  720
KDGKFECPVC NKTFEEQSRY FGHVGSHAKY HGLTPEAFLQ TLSGKVGNDS FAGLSCSIQD  780
LVGSPQLNEK TTASEARSQH HNCSTKHGGN STRGIDLFNS NCQANFNGHN QTWCRPDEIP  840
PTADAPSTWT YRNNVTNCAD RTVPRTAPQP NDHMDCRVSG FAEATNFNDQ AGRHQGFRPS  900
SFGTTNHCQG QIIDHAVAAS KHAEVNNSMK SRDVNLNSRL NTISFPIATA NNETSTALND  960
VNRSCITXVL SSPKGQSFAT CQEVSAYLMS LLGYPEFKTD NIECGSTQQH GLCADDGVNV  1020
LGVQHQIGTG MDSQSILPVA SITFSSHSRD QDETDADDIN SYECQQCNLT FHGQSAYAHH  1080
LITFHKMGSK RRKINKVGKF GEPVIGKDGK FECPVCNKTF EEQSRYFGHV GSHAKYHGLT  1140
PEAFLQTLSG KVGNDSFAGL SCSIQDLVGS PQLNEKTTAS EARSQHHNCS TKHGGNSTRG  1200
IDLFNSNCQA NFNGHNQTWC RPDEIPPTAD APSTWTYRNN VTNCADRTVP RTAPQPNDHM  1260
DCRVSGFAEA TNFNDQAGRH QGFRPSSFGT TNHCQGQIID HAVAASKHAE VNNSMKSRDV  1320
NLNSRLNTIS FPIATANNET STALNDVNRS CITGKGFSGS FSNNDGAASI VLPSSGFNNK  1380
IPSSLGVADR SSVAARSFNA GYVNENGASE ANNIGNKNNT MVYQTSLAMR PVSPCDLQLG  1440
FSGQKQQILP GYGELRPAAS GSPQLGGMAA NSSIPTRPSQ PQFGSMARTD ALPTGPSQPG  1500
SLARPNFVPT GFSQFASRPP TSVPPADSSQ FAGGMARQNI PTTSEPTLVL GYTPQMVNGP  1560
PAQLGWDLSL SRMVSEGMLP VLCIWCNSQF HHFGPIDAQQ SGSFGFICPA CKEKMSGNPN  1620
APNNGPWQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681310.0AK068131.1 Oryza sativa Japonica Group cDNA clone:J013130L03, full insert sequence.
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLA0A0E0EMI20.0A0A0E0EMI2_9ORYZ; Uncharacterized protein
STRINGOMERI08G14370.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419