PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G14040.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 353aa    MW: 36882.3 Da    PI: 7.8603
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G14040.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18169223256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OMERI08G14040.2 169 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 223
                      788899***********************************************98 PP
2HD-ZIP_I/II128.43.1e-41169259192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  OMERI08G14040.2 169 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 259
                      69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-18153219IPR009057Homeodomain-like
SuperFamilySSF466892.48E-18157226IPR009057Homeodomain-like
PROSITE profilePS5007117.232165225IPR001356Homeobox domain
SMARTSM003896.3E-16167229IPR001356Homeobox domain
CDDcd000869.19E-17169226No hitNo description
PfamPF000461.7E-15169223IPR001356Homeobox domain
PROSITE patternPS000270200223IPR017970Homeobox, conserved site
PfamPF021831.0E-10225259IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-25225268IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MELGLSLGDA VTVADGGRPE LVLGLGVGVG AGARRGEEDE RGRREDVVGA GRWAAMAAAS  60
PEPSVRLSLV SSLGLHWPSE TARSEAAARG FDVNRAPSVA AGAPGMEDDE EGPGAAPALS  120
SSPNDSGGSF PLDLSGHGLR GHAEAAAQGG GGERSSSRAS DDDESASARK KLRLSKEQSA  180
FLEESFKEHS TLNPKQKVAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET  240
LTEENRRLHK ELAELRALKT ARPFYMHLPA TTLSMCPSCE RVASNPAAAS TSAPAAATSP  300
AAAAAAPTAA ARTAVASPEP HRPSSFAALF AAPRGFPLTA AQPRPPPPAS NCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648883.10.0homeobox-leucine zipper protein HOX27 isoform X2
SwissprotA2YW030.0HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A0E0EM970.0A0A0E0EM97_9ORYZ; Uncharacterized protein
STRINGOMERI08G13770.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-70homeobox from Arabidopsis thaliana