PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G13180.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 382aa    MW: 43014.4 Da    PI: 8.2729
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G13180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-52161431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s
  OMERI08G13180.1  16 LLPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIYS 108
                      579***************************.89***************9888999*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkk+Lvfykgra +g ktdW+mhe+rl
  OMERI08G13180.1 109 TeGTKCIGLKKSLVFYKGRAARGIKTDWMMHEFRL 143
                      956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5715174IPR003441NAC domain
PROSITE profilePS5100557.04616174IPR003441NAC domain
PfamPF023656.7E-2618143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEERNDVNMD KSDEILLPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKFDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSTE GTKCIGLKKS  120
LVFYKGRAAR GIKTDWMMHE FRLPTLTDPS LPKKPIDKNI PLNDSWTICR IFKKTSSMAQ  180
RALCQTWGAQ LPGTIDPDIF STLQSVQASQ FALESSSCSL QAAATPAHQI TSKYALQGNQ  240
QQQQQHKPSN PQDGSSCKVI NFNCSQSAEV QNSQIILPFE AHTTQKTATP LLFDTQFGQP  300
DQISRFVVDS SVNANGGGIS NKSQDPSARK PGSGFSMNSD WDGVARINFP FDLGADSSED  360
WRSSIPWESF LSPTTVHAEM PH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-541617717168NO APICAL MERISTEM PROTEIN
1ut4_B7e-541617717168NO APICAL MERISTEM PROTEIN
1ut7_A7e-541617717168NO APICAL MERISTEM PROTEIN
1ut7_B7e-541617717168NO APICAL MERISTEM PROTEIN
3swm_A9e-541617720171NAC domain-containing protein 19
3swm_B9e-541617720171NAC domain-containing protein 19
3swm_C9e-541617720171NAC domain-containing protein 19
3swm_D9e-541617720171NAC domain-containing protein 19
3swp_A9e-541617720171NAC domain-containing protein 19
3swp_B9e-541617720171NAC domain-containing protein 19
3swp_C9e-541617720171NAC domain-containing protein 19
3swp_D9e-541617720171NAC domain-containing protein 19
4dul_A7e-541617717168NAC domain-containing protein 19
4dul_B7e-541617717168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0730130.0AK073013.1 Oryza sativa Japonica Group cDNA clone:J033000B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649454.10.0protein FEZ
SwissprotQ9ZVH04e-98FEZ_ARATH; Protein FEZ
TrEMBLA0A0E0ELY40.0A0A0E0ELY4_9ORYZ; Uncharacterized protein
STRINGOMERI08G12900.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-100NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]