PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G12930.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 358aa    MW: 37149.6 Da    PI: 5.8703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G12930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14134180354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  OMERI08G12930.1 134 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 180
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-12134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-14134183No hitNo description
SuperFamilySSF474593.66E-15135189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-15135189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-14137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MWEAVGGGDG TALLPWPGSA AAAAATTSGA VAPLYMPPVA AAAAPFAASE QLPAEEPFYF  60
DGGGGGGVVG HNHHPPHHHQ YGMEAAPPQM TMMQMGGGGS SRMVVSGLLG TLQAELGRMT  120
AKEIMDAKAL AASRSHSEAE RRRRQRINGH LARLRSLLPN TTKTDKASLL AEVIEHVKEL  180
KRQTSAMMED GAAGGEAAAA AAAAPVVLLP TEDDELEVDA AEDEGGRLVA RASLCCEDRA  240
DLIPGIARAL AALRLRARRA EIATLGGRVR SVLLIAAVDE EDPDEAGSDD DGEHGYGVAA  300
SHRRHELVAS IHEALRGVMD RKAASSDTSS SGGGGGSIKR QRMISAHDQQ GSFNSSGW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096160.0AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648851.11e-165transcription factor bHLH30
TrEMBLA0A0E0ELU50.0A0A0E0ELU5_9ORYZ; Uncharacterized protein
STRINGOMERI08G12640.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-40bHLH family protein