PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G12900.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 307aa    MW: 32184.3 Da    PI: 6.893
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G12900.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1128.2e-351242383121
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec......eaess 78 
                       ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt                     +      +++ss
  OMERI08G12900.2 124 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPdsadaaaaapafA------AapppapDQHSS 211
                      689**********************************************************995444443333220......122222122222 PP

              TCP  79 sssasnsssgkaaksaakskksqksaasalnlakesrakarar 121
                        sa++++ ++++                ++  + s+a+ar r
  OMERI08G12900.2 212 MASAAKEKGEASS----------------SSTTNASSARARNR 238
                      2222222222222................22222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.25125183IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-31125228IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MIPPYPNNNL HHHHHHCSSN QEPHLPLHPP AFLMSAPSSS SSPSTLDEYD ARFFFPGADA  60
YTAGHRQDEE TLEAVLRQPV TTPAVAAAAV EGAGGGGGGG GGGAGGSPRA SVAAATAATR  120
RRPFRTDRHS KIRTAQGVRD RRMRLSVGVA RDFFALQDKL GFDKASRTVE WLLTQSKHAI  180
DRLTLPDSAD AAAAAPAFAA APPPAPDQHS SMASAAKEKG EASSSSTTNA SSARARNRGH  240
DGSSPVARGV ELDYWTVSGP SPAAAAAAAA ASTEQPMDGL EYYFQYYNHL EEIMSCDPTT  300
TTDGSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-123transcription factor TB1
TrEMBLA0A0E0ELU20.0A0A0E0ELU2_9ORYZ; Uncharacterized protein
STRINGOMERI08G12610.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-21TCP family protein