PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G12900.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 340aa    MW: 36242.6 Da    PI: 6.8948
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G12900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1128.4e-351242393106
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec......eaess 78 
                       ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt                     +      +++ss
  OMERI08G12900.1 124 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPdsadaaaaapafA------AapppapDQHSS 211
                      689**********************************************************995444443333220......122222122222 PP

              TCP  79 sssasnsssgkaaksaakskksqksaas 106
                        sa++++ +++++s+++ +++++++  
  OMERI08G12900.1 212 MASAAKEKGEASSSSTTNASSARARNRG 239
                      2222222222222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.25125183IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-30125254IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MIPPYPNNNL HHHHHHCSSN QEPHLPLHPP AFLMSAPSSS SSPSTLDEYD ARFFFPGADA  60
YTAGHRQDEE TLEAVLRQPV TTPAVAAAAV EGAGGGGGGG GGGAGGSPRA SVAAATAATR  120
RRPFRTDRHS KIRTAQGVRD RRMRLSVGVA RDFFALQDKL GFDKASRTVE WLLTQSKHAI  180
DRLTLPDSAD AAAAAPAFAA APPPAPDQHS SMASAAKEKG EASSSSTTNA SSARARNRGH  240
DGSSPVARGV ELDYWTVSGP SPAAAAAAAA ASTEQPMDGL EYYFQYYNHL EEIMSCDPTT  300
TTDGRNDVNG TLERRSRNGR DDVADGEERY RERDRRLDRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-122transcription factor TB1
TrEMBLA0A0E0ELU10.0A0A0E0ELU1_9ORYZ; Uncharacterized protein
STRINGOMERI08G12610.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-20TCP family protein