PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G12580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 182aa MW: 19329.8 Da PI: 9.3748 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 22 | 5.1e-07 | 32 | 118 | 43 | 105 |
TCP 43 kdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg..................kaaksaakskksqksaa 105 ++ k+ieWL++ +ai++l+++ ss++a +++++s++++s+s+ ++++++ sk+ q++a+ OMERI08G12580.1 32 QPIKAIEWLIRTVAAAIDALPSLdcsfvlpnaaSSPPA----DDAEVSTSETSKSSvlsltnapcdngdafaefLHCSNTNGSKPLQQQAT 118 5789*******************999999766544444....2223333332222245555666777777777733333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-4 | 33 | 115 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAHAAATTSH SWKITTIRVA VHGARRRSAR LQPIKAIEWL IRTVAAAIDA LPSLDCSFVL 60 PNAASSPPAD DAEVSTSETS KSSVLSLTNA PCDNGDAFAE FLHCSNTNGS KPLQQQATLA 120 YYAAAQSAHM AAPISFEMMA MPPHLAFSQE QQQHATVAAF NRGTLRTKPA ARSGAGRWRT 180 SG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014968 | 1e-141 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000457 | 1e-141 | BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877606.1 | 3e-55 | transcription factor PCF8 | ||||
Swissprot | A2ZMR9 | 2e-57 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A0E0ELN4 | 1e-130 | A0A0E0ELN4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G12300.1 | 1e-131 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 |