PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G08060.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 714aa MW: 78021 Da PI: 7.7075 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 123 | 178 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+ + +t +q e+L+++F+++++p++++ +eLAk+l++te+qVk+WFqNrR+++kk OMERI08G08060.5 123 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKELAKELNMTETQVKYWFQNRRTQMKK 178 6677899***********************************************97 PP | |||||||
2 | START | 72.7 | 9.5e-24 | 333 | 521 | 8 | 165 |
HHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 8 qelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 +e++ k +++ p+W es+n++e+l k + + +++ + r++++v + +++lv++lld + +W e ++ +a t++ is+ OMERI08G08060.5 333 NESLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIIST 424 566667788999999888889999********999553.3589999**************************.******99999********** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCEE CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksnghs 162 g g lqlm aelq++sp vp d++f+R++ q g g w +vdvS+d + ++ ss +R ++llpSg++ie+++ng+s OMERI08G08060.5 425 GpsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTVLPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENGYS 518 ***************************************************9988887764322332222222344899*************** PP EEE CS START 163 kvt 165 k+t OMERI08G08060.5 519 KMT 521 *87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-17 | 109 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.23E-18 | 111 | 180 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.698 | 119 | 179 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-18 | 121 | 183 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.58E-19 | 122 | 178 | No hit | No description |
Pfam | PF00046 | 5.8E-18 | 123 | 178 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 162 | 204 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 14.974 | 308 | 521 | IPR002913 | START domain |
CDD | cd08875 | 1.54E-70 | 312 | 521 | No hit | No description |
SuperFamily | SSF55961 | 9.71E-14 | 312 | 522 | No hit | No description |
Pfam | PF01852 | 1.8E-16 | 333 | 521 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MAMAHMLGWA GPSLHASDHH CLRPRRRTPP PEPCPSLGRR GGDRGSPRSC AVLAIPLVEV 60 MDGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK 120 KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKELAKELNM TETQVKYWFQ NRRTQMKKFK 180 NNEEHKLLQK ENEELKKENA ELRNRMMNST CRACDLPLFH IDCHHWENPM LKGENKGNHG 240 VTSNLIPQAV SSLLPSSSGF VASGSNLSSN AVLMPVSVMP SSVLQPAPAI SGANFPILHN 300 LSANANDGYT EKNVLLDLAN RAMEEFFSLI KENESLVKKK ENGPLWLPHM DILGVESLNY 360 QEYLAKSRTI GQKPVDFKVV VTRDTAIVNG SCVDLVKSLL DANRWRELFP GIVASANTTK 420 IISTGPSNLH DGLLQLMRAE LQVMSPEVPV CDVTFLRQSV QFGSGLWCVV DVSIDTVLPG 480 ESKTAQSSVQ TSSTAARRME VRLLPSGCVI EEMENGYSKM TSSFTGLFAS MSKATLQDGD 540 DSHFAHQIVG SATGEPAGLL LSATTTIWLP SVNPRREMGG NISNTLLLQE ARTDLSGSLI 600 VYARTDVNTV HSIMNSGLNP ATVFLVSSGC AILPDCLESF PLHPAATADQ AGTSSAAIAS 660 RSETGGSFVT VTYQMFFSSQ GGAAPASSSI HQGHDALKKA TDMFKVVLDT LTVA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073784 | 0.0 | AK073784.1 Oryza sativa Japonica Group cDNA clone:J033068E17, full insert sequence. | |||
GenBank | AK100441 | 0.0 | AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650915.1 | 0.0 | homeobox-leucine zipper protein ROC6-like isoform X1 | ||||
Refseq | XP_015650916.1 | 0.0 | homeobox-leucine zipper protein ROC6-like isoform X1 | ||||
Refseq | XP_015650917.1 | 0.0 | homeobox-leucine zipper protein ROC6-like isoform X2 | ||||
TrEMBL | A0A0E0EJW3 | 0.0 | A0A0E0EJW3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G07970.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 8e-50 | HD-ZIP family protein |